Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3583 ATGGAAAGACACAAATGCAAGCTTTGTTCAAGAACGTTTGGCAATGGAAGAGCACTTGGTGGACACATGAAGGCTCATCTTGCTATTGCTAAGTCTCAACAGAAACAATTCACTCAACCTGGTTCTTTTTCATCGTCGGAATCGGAAGAAGATGAAGAAGAAGAAGAAAAAGCTTTGATTAATTATGTTTTGAGAGAGAATCCTAAGAAAAGTCTCAAAGTTGCAGATCCTGAATTTTCTTTTGTACGTGAAACTGAGTCTGTTATTGTTCAAGATAGAGAAAGTGAGACTGAGTCAAAGAACAACCCGACTCGTCAACAACGATCTAAACGGAACAGAAAACAAAACAACGACAACAACAACCAGAATTTTCTTCCACAGAAGAAACCAAAGCCGAGTTTCATGGTGCCAACAACTCCGTCACAATTCACTGAACAAGAACCTGTGAGTTCAGTTTCTGATACTTCACCTGAAGAAGATGTTGCTATGTGTCTCATGATGCTTTCGAGGGACAAATGGAGTCGAAAGATGAACAACGTCAACAATGTGGAACAAGAAGAAGATGAGGGATCGGTGGAGAAAATATCGAAGGTGAAGTTATTGAAACGAGTTCGTGGGAAGCATTTATGCGAAAATTGTGGGAAAACATTTCGATCTTCTAGAGCATTGGGAAGTCATAGAAGTATTTGTTGTCGCGATGAAGCGAAGAATGGTAATGGTAACGATGATAAGATTTTTGAATGTCCATTTTGTTTTAAGGTTTTTGGTTCTGGTCAAGCACTTGGTGGTCACAAGAGATCTCATCTCATGATCCCTTCTTCATCAACTTCCACTGCTAATGTTAATGTTAATCCTACTGCTGCTAGATTCAAAGACAGTTTCATAGATCTCAATATGCCAGCTCCACTTGAAGAAGAAGATGATCTTAGTGTTGTTTCTGATGCCTAA 948 0.3924 MERHKCKLCSRTFGNGRALGGHMKAHLAIAKSQQKQFTQPGSFSSSESEEDEEEEEKALINYVLRENPKKSLKVADPEFSFVRETESVIVQDRESETESKNNPTRQQRSKRNRKQNNDNNNQNFLPQKKPKPSFMVPTTPSQFTEQEPVSSVSDTSPEEDVAMCLMMLSRDKWSRKMNNVNNVEQEEDEGSVEKISKVKLLKRVRGKHLCENCGKTFRSSRALGSHRSICCRDEAKNGNGNDDKIFECPFCFKVFGSGQALGGHKRSHLMIPSSSTSTANVNVNPTAARFKDSFIDLNMPAPLEEEDDLSVVSDA* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3583 315 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Mtr4g3583 315 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 315 - -
Mtr4g3583 315 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 315 IPR044303 GO:0006355
Mtr4g3583 315 MobiDBLite consensus disorder prediction 90 115 - -
Mtr4g3583 315 MobiDBLite consensus disorder prediction 116 157 - -
Mtr4g3583 315 SMART c2h2final6 246 268 IPR013087 -
Mtr4g3583 315 SMART c2h2final6 4 26 IPR013087 -
Mtr4g3583 315 SMART c2h2final6 208 228 IPR013087 -
Mtr4g3583 315 Pfam C2H2-type zinc finger 246 268 - -
Mtr4g3583 315 Pfam C2H2-type zinc finger 208 227 - -
Mtr4g3583 315 Pfam C2H2-type zinc finger 3 28 - -
Mtr4g3583 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 246 268 IPR013087 -
Mtr4g3583 315 ProSitePatterns Zinc finger C2H2 type domain signature. 248 268 IPR013087 -
Mtr4g3583 315 MobiDBLite consensus disorder prediction 31 45 - -
Mtr4g3583 315 SUPERFAMILY beta-beta-alpha zinc fingers 208 268 IPR036236 -
Mtr4g3583 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Mtr4g3583 315 MobiDBLite consensus disorder prediction 90 158 - -
Mtr4g3583 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Mtr4g3583 315 MobiDBLite consensus disorder prediction 31 58 - -
Mtr4g3583 315 Gene3D Classic Zinc Finger 205 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3583 Mtr-Chr4 49572972 49574348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3583 1 312 C2H2 Transcription Factor Family AT3G60580 37.309 1.59e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g3583 zf-C2H2_6 2.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3583 - - vun:114173003 304.679