Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3573 ATGGCACCCAGAAAAGATGGACCTACAAAGGAAACAATGAATAGAGGAGCATGGACCCAAGAGGAAGATCAAAAGCTAGCACAATGCATCCAAATTCATGGTGCCAAGAAATGGAAAACTGTTGCAAACAATTCAGGTTTGAATAGGTGTGGAAAGAGTTGCAGGCTAAGATGGTTGAACTATCTTAGACCCAATATCAAGAGAGGGAACATTTCAGATGAAGAAGAGGATTTGATTATTAGGCTTCACAAACTTCTTGGAAACAGGTGGTCTTTGATAGCGGGAAGACTTCCAGGGCGAACAGACAATGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGCCAGTCACATAGAGGAAAAACCAGAAACTTCCACTGCACAAGAAACTATAGCCCAAGACAATGTTGTTGGGGATAATGCTATGTTAGAGAATAAAGATTCAATTAGTGGAAGTCTTGATTCAGATGTTATCTTTAATGTGAATGAATTCTTAGACTTTCCCACTGAAGAACCATATGTGTTTGATTGGGTGAATAAATTCTTGGAAATTGAAACAAACAACTGA 573 0.3805 MAPRKDGPTKETMNRGAWTQEEDQKLAQCIQIHGAKKWKTVANNSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKASHIEEKPETSTAQETIAQDNVVGDNAMLENKDSISGSLDSDVIFNVNEFLDFPTEEPYVFDWVNKFLEIETNN* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3573 190 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 4 188 - -
Mtr4g3573 190 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Mtr4g3573 190 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Mtr4g3573 190 Gene3D - 71 139 - -
Mtr4g3573 190 CDD SANT 72 113 IPR001005 -
Mtr4g3573 190 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Mtr4g3573 190 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Mtr4g3573 190 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr4g3573 190 SMART sant 67 115 IPR001005 -
Mtr4g3573 190 SMART sant 14 64 IPR001005 -
Mtr4g3573 190 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Mtr4g3573 190 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 188 - -
Mtr4g3573 190 Gene3D - 9 68 - -
Mtr4g3573 190 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Mtr4g3573 190 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3573 Mtr-Chr4 49487364 49488653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3573 9 126 MYB Transcription Factor Family AT3G13540 62.712 1.36e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g3573 Myb_DNA-binding 6.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3573 K09422 - gmx:100799575 269.626