Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3571 ATGGACAGGGAAGACTCTGTCCTTATACACAATAGTCTTTGTCCTCAACCAACCACTTCCTTGTCTTCCTACATTATTGCCTCAACCTCTTCTAATTCATCCTCCTCCTTAGAAGAAGAAGAAGAAGAAGAAGAAGCTACTAACACTAAATGCAAAGAAAAGAAAAAGAAGAAAGTGGGAATGGTGAATAAAGTGAATGATAGGAAGAATAATCCAACGTATAGAGGAGTAAGAATGCGTCAATGGGGCAAATGGGTATCAGAGATTAGAGAGCCAAGAAAAAAATCAAGAATTTGGCTCGGAACTTTTCCAACTCCTGATATGGCTGCTAGAGCTCATGATGTGGCTGCTCTTACTATCAAAGGCTCTTCGGCTTACCTCAATTTTCCCGAATTAGCTGCCGTGCTGCCACGTGCAGCTAGTGCCTCTCCTAAAGACATCCAAGTTGCGGCTGCTAAAGCAGCCGCAACTGTTTATAACCATGCAATCACCGATCAGATTGAGTTAGAAGCTGAAGCCGAGCCGAGCCAAGCTGTTTCTTCTTCGTCGTCGTCTTCTTCTTCTTCTTCTTCGAGTCACAATGAAGGATCATCATTGAAGGGTGAGGATGACATGTTTTTGAACCTACCTGATCTCACACTTGATTTAAGACATAGTGGTGATGATGGGTTTTATTATTCCTCATCAGCTTGGCTTGTAAATGGAGCTCAACATATCGACTCGAGTTTTCGGCTTGAAGACCCTATTCTATGGGACTCTTATCAAGTCACATAA 774 0.4251 MDREDSVLIHNSLCPQPTTSLSSYIIASTSSNSSSSLEEEEEEEEATNTKCKEKKKKKVGMVNKVNDRKNNPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFPELAAVLPRAASASPKDIQVAAAKAAATVYNHAITDQIELEAEAEPSQAVSSSSSSSSSSSSSHNEGSSLKGEDDMFLNLPDLTLDLRHSGDDGFYYSSSAWLVNGAQHIDSSFRLEDPILWDSYQVT* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3571 257 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Mtr4g3571 257 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Mtr4g3571 257 Coils Coil 34 57 - -
Mtr4g3571 257 MobiDBLite consensus disorder prediction 1 57 - -
Mtr4g3571 257 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Mtr4g3571 257 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Mtr4g3571 257 MobiDBLite consensus disorder prediction 175 196 - -
Mtr4g3571 257 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 249 - -
Mtr4g3571 257 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Mtr4g3571 257 MobiDBLite consensus disorder prediction 171 202 - -
Mtr4g3571 257 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Mtr4g3571 257 MobiDBLite consensus disorder prediction 11 35 - -
Mtr4g3571 257 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Mtr4g3571 257 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Mtr4g3571 257 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 25 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3571 Mtr-Chr4 49464729 49466478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3571 64 250 AP2-EREBP Transcription Factor Family AT2G44940 48.792 8.50e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g3571 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3571 - - mtr:MTR_4g100650 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0437 5 4001220 4002014 Mtr4g3571 4 49464729 49466478 PCT