Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3564 ATGATGATGGTTGAAAAGGAAGACTTGGGTTTGAGTCTTAGCTTGAACTTCTTTTACAATACCCCAAAACCTCACCCTCACCCTCTCAATCTCATCTCCTCTTCCATCCAAACTTTCACTTCCTCAGATCGAAATTTGGAAACATGCAGAGGAGAAAGTGGAAAATACCTACGAGGTATCGACGTGAATCGGTTACCATCTACAGCTATTGAATGCCAAGAGGAAGAAGAAGCAGGGGTTTCTTCTCCAAACAGCACAGTTTCAAGTGTTAGTGGAAAAAGAAGCTTAAGAGAAGAAGATCATGACGTGGAAAATAGAGAGAATATCAGTGATGAAGAAGACGCTGAAACTGCTAGGAAAAAACTTAGACTCTCTAAAGACCAATCAGCTATTCTTGAAGAAACCTTCAAAGAACACAATACCCTTAATCCCAAGCAAAAGTTGGCACTTGCAAAGCAACTTGGTCTTCGTCCAAGACAAGTAGAAGTCTGGTTTCAAAACAGAAGAGCTAGGACAAAGCTGAAGCAAACAGAGGTTGATTGTGAAGTGTTGAAAAGGTGCTGTGAAAATCTAACGGAGGAGAATAGGAGACTACAGAAGGAAGTACAAGAGCTTAGAGCACTGAAACTTTCCCCACAATTTTACATGCAAATGACACCACCAACTACTCTTACTATGTGCCCTTCTTGTGAACGTGTGGCTGTTCCATCTAATGCTTGTGTTGATGCATCTAACCGTCACCATTCTATGGCCCAAGCCCATCCTCGGGCTGTACCTATAGGCCCATGGGCTTCTGCTGCTCCTCCACTCACGAATAGAATGTTTGATGTTTTCCGTCAATGA 843 0.4259 MMMVEKEDLGLSLSLNFFYNTPKPHPHPLNLISSSIQTFTSSDRNLETCRGESGKYLRGIDVNRLPSTAIECQEEEEAGVSSPNSTVSSVSGKRSLREEDHDVENRENISDEEDAETARKKLRLSKDQSAILEETFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSNACVDASNRHHSMAQAHPRAVPIGPWASAAPPLTNRMFDVFRQ* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3564 280 SUPERFAMILY Homeodomain-like 113 176 IPR009057 -
Mtr4g3564 280 Pfam Homeodomain 119 173 IPR001356 GO:0003677
Mtr4g3564 280 SMART halz 175 218 IPR003106 GO:0006355|GO:0043565
Mtr4g3564 280 MobiDBLite consensus disorder prediction 74 121 - -
Mtr4g3564 280 Gene3D - 123 173 - -
Mtr4g3564 280 Coils Coil 174 211 - -
Mtr4g3564 280 Pfam HD-ZIP protein N terminus 3 98 IPR006712 GO:0005634
Mtr4g3564 280 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 272 - -
Mtr4g3564 280 Pfam Homeobox associated leucine zipper 175 209 IPR003106 GO:0006355|GO:0043565
Mtr4g3564 280 SMART HOX_1 117 179 IPR001356 GO:0003677
Mtr4g3564 280 PANTHER - 5 272 - -
Mtr4g3564 280 ProSitePatterns 'Homeobox' domain signature. 150 173 IPR017970 GO:0000981|GO:0006355
Mtr4g3564 280 PRINTS Lambda-repressor HTH signature 146 155 IPR000047 GO:0003677
Mtr4g3564 280 PRINTS Lambda-repressor HTH signature 155 171 IPR000047 GO:0003677
Mtr4g3564 280 ProSiteProfiles 'Homeobox' domain profile. 115 175 IPR001356 GO:0003677
Mtr4g3564 280 MobiDBLite consensus disorder prediction 78 92 - -
Mtr4g3564 280 CDD homeodomain 119 176 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3564 Mtr-Chr4 49394994 49396763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3564 2 279 Homeobox Transcription Factor Family AT4G16780 60.606 1.40e-104 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr4g3564 HD-ZIP_N 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3564 K09338 - gmx:100813367 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0441 5 4063086 4065128 Mtr4g3564 4 49394994 49396763 PCT