Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3562 ATGCATATAGAGGAATTGAAGGGAGGTGAGGTGGTGGTAGAAGGTGGAGAGGAAGGAAAATGGAGTTTTGTTGGTTCTGATCCGAAAAGGGTTTTGGTTGGAGCAGGCGCTCGAGCGCTATTTTATCCCACGCTTGTTTATAATGTTGTTAGGAATAGGCTTCAGGCTGAATTTCGATGGTGGGATAAGATTGATGAGTTCATATTGTTAGGTGCTGTTCCATTTCCTATCGATGTTCCTCGCTTGAAGGATCTTGGTGTTCGTGGGGTCATCACTTTGAATGAGCCATATGAGACTTTAGTTCCAACCACATTATATCATGCTCATGGAATTGATCATCTGGTGATTCCTACTAGAGATTACTGCTTTGCTCCACAACTAAATGACATTCGCCGTGCTGTTGACTTCATACACAAAAATGCATTATCTGGACGCACTACATATGTCCACTGCAAAGCTGGACGGGGTCGCAGCACAACTATCGTTATTTGTTATCTGGTGCACCACAAACTGATGTCACCTGATGCTGCATATGAATATGTGAAGTCAATTCGTCCAAGGGTGCTTCTAGCTTCTGCTCAGTGGCAAGCTGTCCAGGAATACTACCGCCACCTTATTGTGAGGAGGGCTGTTGGATTTGCACCCGCAGCTGAACTATTTGTAAAGGCTTCTGAGTTTGCAGCAGCTTCACAAGATCTTGTACCTTTTGATGACAATTCTGTAGTTGTGGTAACAGAGCAAGATCTCGAAGGATACGACCCAAGTTGTCAATCAGATACCACGGCAAGAGAAATATGGGCAGATTTAAGTGTTGTTTACCGTGTGCGAGTTGCTGGACAGGCAGCATTGGCTAGAATATCATGCCTTTGGTTGCGATATGGTACCGACCAGAAGATATCTGCGGGAAAACTGAGCATGGAAAACAGTTGCTCAATCAGAACTAATCACTTGGGAGAAATTAATGTTGATATCCATGTGTACTGA 984 0.4411 MHIEELKGGEVVVEGGEEGKWSFVGSDPKRVLVGAGARALFYPTLVYNVVRNRLQAEFRWWDKIDEFILLGAVPFPIDVPRLKDLGVRGVITLNEPYETLVPTTLYHAHGIDHLVIPTRDYCFAPQLNDIRRAVDFIHKNALSGRTTYVHCKAGRGRSTTIVICYLVHHKLMSPDAAYEYVKSIRPRVLLASAQWQAVQEYYRHLIVRRAVGFAPAAELFVKASEFAAASQDLVPFDDNSVVVVTEQDLEGYDPSCQSDTTAREIWADLSVVYRVRVAGQAALARISCLWLRYGTDQKISAGKLSMENSCSIRTNHLGEINVDIHVY* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3562 327 Pfam Dual specificity phosphatase, catalytic domain 100 203 IPR000340 GO:0008138|GO:0016311
Mtr4g3562 327 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Mtr4g3562 327 CDD PTPMT1 60 204 IPR044596 GO:0004721
Mtr4g3562 327 Gene3D Protein tyrosine phosphatase superfamily 60 210 IPR029021 -
Mtr4g3562 327 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Mtr4g3562 327 PANTHER - 1 327 - -
Mtr4g3562 327 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Mtr4g3562 327 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 327 - -
Mtr4g3562 327 SMART ptp_7 102 213 IPR003595 -
Mtr4g3562 327 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 205 IPR029021 -
Mtr4g3562 327 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3562 Mtr-Chr4 49379039 49382891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3562 29 327 Protein tyrosine phosphatase (PTP) family AT2G35680 61.889 4.35e-130 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3562 - - gmx:100790413 540.806