Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3559 ATGGCTAACTTTGAAGAAGTTTCAGCTCTTAAACGTATCAAATTCCATCTTCTCGGTGAATTTTCTCCACTTCCATCTCCTATTTCAACACCTTGCTTTGATTTTGATTTTGATTTTGAATTTCAAACCAACCAAACAGCATCTCAATCAGAATCCAATTCCTCCACTTCAATCTCTATGAATCAATATTTCACTAACCTCCTTGAAACAGATGCACAAATTCCACTGTTTGAATTTGACACAAAACCTCAAATGATGGAACATGAGAGCCCTAAAGCTCTAACATCATCTCATCCTTTTAGCCAATCTCAACGAACCACAGAGAAGAAGCCTAAACTGGCTCGAAAACCCTCGCTAGAAATCGCTCTACCGAAGAAAACTGAATGGATCCAATTCAGTAAACCGGATCCAAAACCGGAGGCGGTTGTCCAGAAGCCTGAAGCAGTTAAGAAACAGCACTACAGAGGAGTTAGACAAAGACCATGGGGAAAGTTCGCCGCCGAGATCCGTGACCCGAACAAACGAGGTTCAAGAGTTTGGCTTGGAACTTTTGAAACTGCTATTGAAGCTGCTAAAGCCTACGATTCAGCCGCTTTCAGGATGCGCGGATCCAAAGCGATTCTCAACTTTCCACTTGAAGTCAACGCAGCCGCGGCGACGGAGACCGCAGTCACAGCGGTGGAAACCACCGGTGACGGCAATAAGAAACGGTGCCGTGAAGAAGAAGAAGAGGAGGTGGTAGAAGTAAAACCGGTGGTGAAAAAGGAGAAAATAACGGAATATGATATGAGTTGTTTCAAAGAGATGCCTTTAACGCCGTCTTTTTGGACTGGTTTGTGGGACGGAGATGTCAAGGGGATGTCCAGCGTTTCACCGTTGTCTCCGTTATCTTCCTTCTGTTTGTCACCTTTAGTTGTTGTGTGA 924 0.4437 MANFEEVSALKRIKFHLLGEFSPLPSPISTPCFDFDFDFEFQTNQTASQSESNSSTSISMNQYFTNLLETDAQIPLFEFDTKPQMMEHESPKALTSSHPFSQSQRTTEKKPKLARKPSLEIALPKKTEWIQFSKPDPKPEAVVQKPEAVKKQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDSAAFRMRGSKAILNFPLEVNAAAATETAVTAVETTGDGNKKRCREEEEEEVVEVKPVVKKEKITEYDMSCFKEMPLTPSFWTGLWDGDVKGMSSVSPLSPLSSFCLSPLVVV* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3559 307 Gene3D AP2/ERF domain 152 214 IPR036955 GO:0003700|GO:0006355
Mtr4g3559 307 ProSiteProfiles AP2/ERF domain profile. 153 211 IPR001471 GO:0003700|GO:0006355
Mtr4g3559 307 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 294 - -
Mtr4g3559 307 MobiDBLite consensus disorder prediction 90 107 - -
Mtr4g3559 307 CDD AP2 152 211 IPR001471 GO:0003700|GO:0006355
Mtr4g3559 307 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 5 294 - -
Mtr4g3559 307 Pfam AP2 domain 153 203 IPR001471 GO:0003700|GO:0006355
Mtr4g3559 307 SMART rav1_2 153 217 IPR001471 GO:0003700|GO:0006355
Mtr4g3559 307 PRINTS Ethylene responsive element binding protein signature 154 165 IPR001471 GO:0003700|GO:0006355
Mtr4g3559 307 PRINTS Ethylene responsive element binding protein signature 193 213 IPR001471 GO:0003700|GO:0006355
Mtr4g3559 307 MobiDBLite consensus disorder prediction 87 115 - -
Mtr4g3559 307 SUPERFAMILY DNA-binding domain 153 213 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3559 Mtr-Chr4 49349636 49350810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3559 62 307 AP2-EREBP Transcription Factor Family AT5G47230 47.200 6.10e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g3559 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3559 K09286 - gmx:100800453 300.441