Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3558 ATGGCTAATTTTGAAGAAGCTTCAGCTCTAAAACGCATCAAAATGCATCTTCTTGGTGAATTTTCTCCACTTCCATCTCCTATTTCAACACCTTGCTTTGATTTTGATTTTGATTTTGAATTTCAAACAATCCCAAACATATCTCAATCTGAATCAAACTCTTCCACTTCTGATTCATCAATCTCTTTGGATCATTATTTAACTAACCTCCTTGAAACAGATACACAAATTCCTCTGTTTGAATTTGACACAAAACCTCAATTAATGGAACATGAGAGCCCTAAAGCTCTAACATCATCTCATCATGTTAATCAACCTCAACGAACAGTAGAGAAGAAGCCTAAACTGAGCCGAAAACCATCGCTGGAAATCGCTCTACCGAAGAAGACTGAGTGGATCCAATTCGGTAAACCTGATCCAAAACCGGAGGTGGTTGTTCAGAAACCGGAAGTTGCTGAGAAACAACACTACAGAGGTGTTAGACAAAGACCATGGGGAAAATTCGCCGCGGAGATCCGTGACCCGAACAAAAGAGGTTCAAGAGTTTGGCTTGGAACCTTTGAAACTGCTATCGAAGCAGCTAAAGCCTACGATTCAGCTGCTTTCAGGCTGCGTGGCTCCAAAGCGATTCTCAACTTTCCACTTGAAGTCAACGCAGTCGCAGCATCGGCGGAAACCACCGTGGAAGGCAATAAGAAACGGTGCCGTGAAGAAGAAGAAGAAGAAGAGGAAGAGGTGGTAGAAGTAAAACCGGTGGTGAAAAAGGAAAAAATAACGGAATATGATATGAACTGTTTTAAAGAGATGCCGTTAACGCCGTCTTTTTGGACTGGTTTATGGGACGGTGATGTCAAGGGTTTGGTCAGCGTTCCACCGCTGTCGCCGTTACCTTCCTTTTGTTTGTCACCTTTAGTTGTTGTGTGA 924 0.4264 MANFEEASALKRIKMHLLGEFSPLPSPISTPCFDFDFDFEFQTIPNISQSESNSSTSDSSISLDHYLTNLLETDTQIPLFEFDTKPQLMEHESPKALTSSHHVNQPQRTVEKKPKLSRKPSLEIALPKKTEWIQFGKPDPKPEVVVQKPEVAEKQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDSAAFRLRGSKAILNFPLEVNAVAASAETTVEGNKKRCREEEEEEEEEVVEVKPVVKKEKITEYDMNCFKEMPLTPSFWTGLWDGDVKGLVSVPPLSPLPSFCLSPLVVV* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3558 307 MobiDBLite consensus disorder prediction 92 119 - -
Mtr4g3558 307 PRINTS Ethylene responsive element binding protein signature 157 168 IPR001471 GO:0003700|GO:0006355
Mtr4g3558 307 PRINTS Ethylene responsive element binding protein signature 196 216 IPR001471 GO:0003700|GO:0006355
Mtr4g3558 307 Pfam AP2 domain 156 206 IPR001471 GO:0003700|GO:0006355
Mtr4g3558 307 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 294 - -
Mtr4g3558 307 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 5 294 - -
Mtr4g3558 307 SMART rav1_2 156 220 IPR001471 GO:0003700|GO:0006355
Mtr4g3558 307 CDD AP2 155 214 IPR001471 GO:0003700|GO:0006355
Mtr4g3558 307 Coils Coil 221 241 - -
Mtr4g3558 307 Gene3D AP2/ERF domain 155 216 IPR036955 GO:0003700|GO:0006355
Mtr4g3558 307 ProSiteProfiles AP2/ERF domain profile. 156 214 IPR001471 GO:0003700|GO:0006355
Mtr4g3558 307 SUPERFAMILY DNA-binding domain 156 216 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3558 Mtr-Chr4 49342422 49343672 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3558 66 307 AP2-EREBP Transcription Factor Family AT5G47230 51.020 3.11e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g3558 AP2 5.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3558 K09286 - gmx:100800453 298.901