Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3556 ATGTACGGAAATAGTAATTTTGATTCCGATCTTGCCCTTTTAGACTCTATTCGCCGCCACTTGTTAGGAGAATCCGAATTTATATTCGGTGCTCCAACAAATGTTTCGGGTAATACCCGAGTTTTCTCTCGGAGCTCCAGTTTCAGCAGCTTATACCCATGTTTAAGTGACAATTGGGGTGAACTACCACTCAAAGAAGATGATTCTGAAGATATGGTACTTTACGGCGTCCTCCGCGATGCCGTAAATGTTGGGTGGGTCCCGTCTCTCGAAGTCGGGTCACCCGAAAGTGTCTCATCGGTTTTTCCGTTAGAAATGACGGTGAAACCGGAGCCGGATGTTATGCCGGTGGAGAATGTCCTCCCGGTAGCTTCAACAGCGGAGCAAGTGGTTCCTGAGGGGCCAAAAGCTGCTCCGGTGAAAGGAAAACACTACCGCGGTGTGAGACAACGGCCGTGGGGGAAATTTGCGGCGGAGATTCGTGATCCGGCGAAGAACGGAGCTAGAGTTTGGCTTGGAACATTTGAAACCGCTGAGGATGCGGCTTTGGCTTATGATAGAGCTGCGTATAGGATGAGAGGGTCAAGAGCTTTGTTGAATTTTCCACTTCGGGTTAACTCCGGTGAACCCGACCCGGTTAGAATAGCTTCAAAACGTTCTTCGCCGGAACGCTCTTCGTCATCGGAAAGTAATTCTCCGGCGAAGAGGAAGAAAGTAATGACAGCTCAGAGTGGATTAAAAACAGGACAAGTGGGAAGTCAAGTGGCACAACAATGTACACGTGGAGGACAGTTATTGGTTTCTTAA 807 0.487 MYGNSNFDSDLALLDSIRRHLLGESEFIFGAPTNVSGNTRVFSRSSSFSSLYPCLSDNWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLEVGSPESVSSVFPLEMTVKPEPDVMPVENVLPVASTAEQVVPEGPKAAPVKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRIASKRSSPERSSSSESNSPAKRKKVMTAQSGLKTGQVGSQVAQQCTRGGQLLVS* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3556 268 MobiDBLite consensus disorder prediction 209 268 - -
Mtr4g3556 268 SUPERFAMILY DNA-binding domain 144 204 IPR016177 GO:0003677
Mtr4g3556 268 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
Mtr4g3556 268 PANTHER BNAANNG21280D PROTEIN 26 249 - -
Mtr4g3556 268 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Mtr4g3556 268 MobiDBLite consensus disorder prediction 219 268 - -
Mtr4g3556 268 CDD AP2 143 202 IPR001471 GO:0003700|GO:0006355
Mtr4g3556 268 Gene3D AP2/ERF domain 143 205 IPR036955 GO:0003700|GO:0006355
Mtr4g3556 268 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Mtr4g3556 268 PRINTS Ethylene responsive element binding protein signature 168 184 IPR001471 GO:0003700|GO:0006355
Mtr4g3556 268 Pfam AP2 domain 144 194 IPR001471 GO:0003700|GO:0006355
Mtr4g3556 268 PANTHER DNA-BINDING DOMAIN 26 249 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3556 Mtr-Chr4 49321973 49323318 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3556 1 267 AP2-EREBP Transcription Factor Family AT4G17500 53.287 7.48e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g3556 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3556 K09286 - gmx:100803653 326.635