Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3553 ATGGGTAATATGATAATGGAAACAACTCCATTATCAGTGAATGAAATAGCAACCATTGTTCCGGAAACGAGTATTAATCCTGACCAGAGTTTGCCAATAGAAACAGCTCCATCATCAATGAACGAAACAAGCAATGTTCAACAAACAAGTCATAATCAGGAACATGAAACTCCAAGCGCAACTGCGGGGAATGCATCAATGAATGTAACAGATATTGATGTTCCAGAAATAAATAATAATCAGGAACATAGTTTGACGATGGAAACAACTTCATCATCAATTCCCGAACCATTACCGCGTCAACCAACAATAAAACATAATAAAAAAACCATCCTAGCATGGTTGACAGCTTGCAAGGAAATTGATGAAGGGACCCAGGTGCGTTACCATGATGGGGAAAAACCGATAACAGGTCGAATTTTCAATGGAGCCATCTTATGTAGCTGTTGCGACGAGGAAATCTCTGTATGGAAGTTTGAGAAGCATGCTCAAAGTGAGGATATACAACCATACAAACGCATTTTGGTGGCGACACGGAAGTCCGTCCTCCAAAACATCCTGATTAGTAAGTGGTTGAAAGAGGATGAACAAAAACGTCGAGACATGTTCATGTATGCTCCCATACATGACATTGTTTGTTTAGTTTGTGGAAAGGGAGAAGATGAAGGGGAATTTATTAACTGCACAAATTGTCCCTCCACTTATCATCGTTCCTGTGCTTTCATACAGGGTTTTTCTCAGGAAAACGACGACCATTGGTTATGTTCTTACTGCAGCTGCAAATACTGTAAGGGTGGTCATGAAGAGGAGTATCCTTTAGACATCCTGTGCCGCCAATGCAACAAGAAGTGTCATTGGATGTGCCTAAATAAATCTGAAAAAGATTTATTAAGGACTCATTGTTCCGTAAGTTGTAAAGAGATTGATGAGAAATTGAAGGGCTCAATCGGAATCCAAAATAATATCAATGGGAATGAGAGCTATTCTTGGAGAGTCCTCCAACAAATGGATACGAAAAGTGAGGATCATTATGTAATAAGCAATTCAAAGGTTGCAGCTACTTGCATGTTGATGGAAGAAGCTTTTGGGATGATAACAGACAAACATACTGGCGTCAATGTGGTACAAAGTGTTTTATACAACCGCAGATCAAATCTAAGGAGGCTCGATTTTCGTCGATGTTATACATTTATCATCGAAGAAGATGACGCGATAATTGCTGCAGCTACCGTAAGATTTCATGGGAAAGGCCTTGCAGAAATGCCTTTCATTGCCACAGATGAGGCATACAGAGGCAAAAGAATTTGCCATTTGTTAATGGAGATAATTGAATCGTTTCTTCAAAGTCTTGAAGTTGAAAGGTTGACCATTCCATCTAATCCACAAACTGTTGAAATGTGGAAGCAAAAATATAGCTTCAGTGTGGTCAACGACAAGAAGTTGAAGAAAGATATGGTTTCATATAACCTTTTGATGTTCCCTGGAGCTATAAGATTAAGCAAAAGACTTTTTCTGGACTTGAATGAGCCGTTCGGGAATGTTGAACCTAATACCGTCAATTAG 1563 0.3928 MGNMIMETTPLSVNEIATIVPETSINPDQSLPIETAPSSMNETSNVQQTSHNQEHETPSATAGNASMNVTDIDVPEINNNQEHSLTMETTSSSIPEPLPRQPTIKHNKKTILAWLTACKEIDEGTQVRYHDGEKPITGRIFNGAILCSCCDEEISVWKFEKHAQSEDIQPYKRILVATRKSVLQNILISKWLKEDEQKRRDMFMYAPIHDIVCLVCGKGEDEGEFINCTNCPSTYHRSCAFIQGFSQENDDHWLCSYCSCKYCKGGHEEEYPLDILCRQCNKKCHWMCLNKSEKDLLRTHCSVSCKEIDEKLKGSIGIQNNINGNESYSWRVLQQMDTKSEDHYVISNSKVAATCMLMEEAFGMITDKHTGVNVVQSVLYNRRSNLRRLDFRRCYTFIIEEDDAIIAAATVRFHGKGLAEMPFIATDEAYRGKRICHLLMEIIESFLQSLEVERLTIPSNPQTVEMWKQKYSFSVVNDKKLKKDMVSYNLLMFPGAIRLSKRLFLDLNEPFGNVEPNTVN* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3553 520 Pfam Acetyltransferase (GNAT) family 380 468 IPR000182 GO:0016407
Mtr4g3553 520 SUPERFAMILY FYVE/PHD zinc finger 206 261 IPR011011 -
Mtr4g3553 520 Pfam Tify domain binding domain 138 183 IPR032308 -
Mtr4g3553 520 MobiDBLite consensus disorder prediction 23 66 - -
Mtr4g3553 520 CDD NAT_SF 397 457 - -
Mtr4g3553 520 Pfam PHD-finger 212 261 IPR019787 -
Mtr4g3553 520 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 356 520 IPR000182 GO:0016407
Mtr4g3553 520 ProSiteProfiles Zinc finger PHD-type profile. 210 261 IPR019787 -
Mtr4g3553 520 Gene3D - 372 489 - -
Mtr4g3553 520 SMART PHD_3 212 259 IPR001965 -
Mtr4g3553 520 CDD PHD_SF 212 258 - -
Mtr4g3553 520 PANTHER PHD FINGER PROTEIN 12 48 507 IPR042163 GO:0003714|GO:0045892
Mtr4g3553 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 259 IPR013083 -
Mtr4g3553 520 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 384 477 IPR016181 -
Mtr4g3553 520 PANTHER GNAT FAMILY ACETYLTRANSFERASE 48 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3553 Mtr-Chr4 49286145 49289018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3553 108 504 PHD Transcription Factor Family AT4G14920 35.154 1.48e-69 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr4g3553 Acetyltransf_1 1.1e-07 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3553 - - mtr:MTR_4g099530 1041.95