Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3546 ATGGGAAAACAAGGACCTTGCTTTCACTGTGGAGTTACAAGCACACCACTTTGGCGTAACGGGCCACCCGAGAAGCCAATTTTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCTTTACATGCTCGGACAGATCCTGTCGATTTTGAGGATCAGAGAGTTTCAAGGTTAAAGATTGTATCATTAAATAAGAACAAAGAAGTGAAATTGGTTAAACGAAAGCAGAACTATGATAATGCTTATGCTGCATCTGGATGGTTCACCCCTGAATATAATCAAGGATTCCAAAAGGCTGTTGATGAGGATACAAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAATTCAGAAAGCTGCGTTCAATTTGGCGGCACCGATGCTAGTGATTTAACAGGTCCTTCTCAGTCAGTAGTCTGGGATACTGCGGCGCCTTCAAAAAAGAGGACATGTGCCGGTCGTCTGAAGCATTCTTCTGTTGAAAAGCTCACACAAGACTTGTGTACTATTCTCCATGAACAACAGCAATCCTGTTTCTCTGCTTCTTCTGAAGAGGAACTTCTTTACGATAGTGAAACTCCGATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTTATTAGGCATCCTAGCTCTATAGCTCGTGACGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAGGCATATTCGTGTTATGGTTCAATTCCCAGGCTTAGTGATTACACCGGCATGAATTTCTCTTCTCAGGGAGTTGCAAAGGTTAGAAACTCTGCTGGCCCAAGACTGCAACAGGAGCAACTTGTGTGGGACAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCATCACTGTGCTCAATAGATTTAAATGATGTAGTAAACTATGAGGCGTTTTCAAGAAACTTGACAAATGAAGAACAGCAGCAATTACTGAAGTATCTCCCTGTGATTGATACTGCTAAATTTCCTGATAGCATTAAAATTATGTTCGATAGCTTTCAATTCAAGGAGGAGTTAACTTATTTTCAGAAACTTCTCGAGGAAGGTGTCTTTGATATCTCTTTGTTGAGGGGAGACCCTGAAGACTGCAAGACATCTAAAAGGCTTGCATTATCGAACTTGTCAAAGTCAAAATGTGTAGAACACTATAATTTTCTCAAGAAAGGTGGAAACAAAGATGGAAAACGTAATGGTATGGAATCTCCTGCCATGGCATCAAGTAATGTTGCGAATGTTAAGAGATTGCGTGTCAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGTCCCAAAAGGGTGATAGTAAAAGCTGGCACTGGCGGCAAAGAAGCCGTAGATGGCTCTAGCATCAGTCCGAAAAGCCTATTTGCATTTCCTCGCAATGGTGGCTTGCACATGCTGGATTCTTTAAACTTCGTTGATGAGAGTTCGGATCAGGATCTGCTGCTAGAGTTTCCATCTAACAATTCCTTTCCACAGGCAGAGCTCCTGCTCCCAAGTTCTAGCTTGGTTGCTCAAGGAAGCACCAGTAGTAGCTCAGTATACTCGCATGTTACTCGTCCTTGA 1629 0.4205 MGKQGPCFHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTDPVDFEDQRVSRLKIVSLNKNKEVKLVKRKQNYDNAYAASGWFTPEYNQGFQKAVDEDTSNRSSSGSAISNSESCVQFGGTDASDLTGPSQSVVWDTAAPSKKRTCAGRLKHSSVEKLTQDLCTILHEQQQSCFSASSEEELLYDSETPMVSVEIGHGSMLIRHPSSIARDEESEASSLSVDNKQCLMNEAYSCYGSIPRLSDYTGMNFSSQGVAKVRNSAGPRLQQEQLVWDKSQLEKLEVLGNHDSSLCSIDLNDVVNYEAFSRNLTNEEQQQLLKYLPVIDTAKFPDSIKIMFDSFQFKEELTYFQKLLEEGVFDISLLRGDPEDCKTSKRLALSNLSKSKCVEHYNFLKKGGNKDGKRNGMESPAMASSNVANVKRLRVSQNQNFPELKTTMRSPKRVIVKAGTGGKEAVDGSSISPKSLFAFPRNGGLHMLDSLNFVDESSDQDLLLEFPSNNSFPQAELLLPSSSLVAQGSTSSSSVYSHVTRP* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3546 542 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Mtr4g3546 542 Gene3D - 289 391 IPR038108 -
Mtr4g3546 542 Pfam Asx homology domain 293 370 IPR028020 -
Mtr4g3546 542 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
Mtr4g3546 542 PANTHER OSJNBB0038F03.10 PROTEIN 1 542 IPR044589 -
Mtr4g3546 542 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 542 - -
Mtr4g3546 542 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Mtr4g3546 542 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Mtr4g3546 542 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Mtr4g3546 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Mtr4g3546 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 298 409 IPR044867 -
Mtr4g3546 542 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3546 Mtr-Chr4 49192308 49198498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3546 1 518 C2C2-Gata Transcription Factor Family AT4G17570 51.407 1.14e-146 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr4g3546 ASXH 3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3546 - - gmx:100799745 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0459 5 4235074 4240198 Mtr4g3546 4 49192308 49198498 PCT