Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3545 ATGGATCTTAGTTTTAAGCATCAATTTAGCCTTGTCTGTGTTATTCTGTTGTTTCCAGTACTATGTAATTGCAAGGAATATTATACCAAATCCAGAGCTTCCTATTATGGCACCTCTGACGGCTATGGAAATCCAAGAGGTGCTTGTGGTTTTGGAGACTATGGAAAGACAGTCAATGATGGCAGTGTAACAGCTGTGTCTGCAAAGTTGTGGAAGAATGGAGGAGGCTGTGGTGCATGCTATCAAGTGAGATGCAAAATACCACAATATTGTGATGACAATGGAGCATTGGTGGTGGTAACCGACTATGGTGAGGGAGATAGAACTGACTTCATAATGAGTCCACGCGCCTTCTCAGGATTGGGACGCAACGCAGCTGCATCTGAAAAGCTGAAGAAATATGGAGTATTGGATGTTGAATACAAAAGGGTCTCATGTACATTTAAAGGTAACAATATCGTGTACCAGATCAATGAGCACAGTCAAAACCCAGGTTACATTGCTATCGTGATCCTCTACGTTGGTGGAACGTATGATGTCAATGCTGTTGAGATGTGGCAGAAAGAACAGCACAAATGGGAGTACATGCGTCGGTCTTATGGGGCAGTATTTGACTATGCTAACCCACCCAAAGGTGAAATCAGATTGAGGTTTCAAGTTAGTAGCAATGTTGGGGTCAATTGGGTGGAGTCAAGGTTCGCAATACCTGCAGGTTGGAAAGCTGGTGCTACTTATTCCACCAAGATTCAGACTTAA 756 0.4312 MDLSFKHQFSLVCVILLFPVLCNCKEYYTKSRASYYGTSDGYGNPRGACGFGDYGKTVNDGSVTAVSAKLWKNGGGCGACYQVRCKIPQYCDDNGALVVVTDYGEGDRTDFIMSPRAFSGLGRNAAASEKLKKYGVLDVEYKRVSCTFKGNNIVYQINEHSQNPGYIAIVILYVGGTYDVNAVEMWQKEQHKWEYMRRSYGAVFDYANPPKGEIRLRFQVSSNVGVNWVESRFAIPAGWKAGATYSTKIQT* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3545 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Mtr4g3545 251 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Mtr4g3545 251 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Mtr4g3545 251 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Mtr4g3545 251 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Mtr4g3545 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Mtr4g3545 251 SUPERFAMILY PHL pollen allergen 152 246 IPR036749 -
Mtr4g3545 251 Gene3D - 148 251 IPR036749 -
Mtr4g3545 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Mtr4g3545 251 Pfam Lytic transglycolase 64 141 IPR009009 -
Mtr4g3545 251 SUPERFAMILY Barwin-like endoglucanases 14 151 IPR036908 -
Mtr4g3545 251 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 250 - -
Mtr4g3545 251 PANTHER EXPANSIN-B3 4 250 - -
Mtr4g3545 251 Gene3D - 25 144 IPR036908 -
Mtr4g3545 251 SMART dpbb_1 63 141 IPR007112 -
Mtr4g3545 251 Pfam Expansin C-terminal domain 155 236 IPR007117 -
Mtr4g3545 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3545 Mtr-Chr4 49187524 49188969 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3545 1 249 Expansin Gene Family AT4G17030 50.602 4.14e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3545 - - gmx:100779487 371.703