Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3543 ATGGAACTCAGTTTTAAGCACCAACTTGGCCTTGTTTGTATCATACTGCTCTTACCTCAGCTCTGTACCTCACAAGACTCCTTTACTGACTCCAGAGCAACATATTACGGTAGCCCAGATTGCTATGGGACTCCAAGGGGAGCTTGTGGCTTTGGAGAATATGGAAGGACAGTGAATGATGGCAATGTTGCTGGTGTGTCTAAGCTATGGAAGAATGGCACTGGCTGCGGTGCATGCTATCAGGTGAGGTGTAAAATACCACAATACTGCGATGAAAATGGAGCAACCGTAGTGGTAACAGACTATGGTGAAGGAGACAGAACAGACTTCATAATGAGTCCACGAGGCTACGCGAAATTAGGACGCAATGCAGATGCATCTGCAGAGCTATTCAAATATGGTGTAGTAGATATTGAATACAAAAGAGTCCCATGTATGTACAGTGGCTATAACATAGTGGCTCAAGTCCATGAACGCAGCAAAAATCCTGATTACTTTGCTGTTGTAGTTCTCTATGTAGATGGAATGTATGATGTCAATGCTGTTGAAATGTGGCAGGAAGATTGCCAAGAATGGAGGCCAATGAGGAGAGCTTATGGAGTAGTGTTTGACTATGCCAATCCTCCAAGTGGTGAAATAAATTTGAGGTTCCAAGTGAGTGGAAATGAAGGTGTTTATTGGGTGCAGTCCAAGAATGCTATCCCTAGTGATTGGAAGGCTGGAGCTGCATATGACACTATGGTTCAGCTTAATTAG 756 0.4378 MELSFKHQLGLVCIILLLPQLCTSQDSFTDSRATYYGSPDCYGTPRGACGFGEYGRTVNDGNVAGVSKLWKNGTGCGACYQVRCKIPQYCDENGATVVVTDYGEGDRTDFIMSPRGYAKLGRNADASAELFKYGVVDIEYKRVPCMYSGYNIVAQVHERSKNPDYFAVVVLYVDGMYDVNAVEMWQEDCQEWRPMRRAYGVVFDYANPPSGEINLRFQVSGNEGVYWVQSKNAIPSDWKAGAAYDTMVQLN* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3543 251 PANTHER EXPANSIN-B3 4 251 - -
Mtr4g3543 251 SUPERFAMILY PHL pollen allergen 155 245 IPR036749 -
Mtr4g3543 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Mtr4g3543 251 SMART dpbb_1 62 140 IPR007112 -
Mtr4g3543 251 Pfam Expansin C-terminal domain 155 235 IPR007117 -
Mtr4g3543 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Mtr4g3543 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Mtr4g3543 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Mtr4g3543 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Mtr4g3543 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Mtr4g3543 251 Gene3D - 19 144 IPR036908 -
Mtr4g3543 251 PRINTS Major pollen allergen Lol pI signature 64 75 IPR005795 GO:0005576|GO:0019953
Mtr4g3543 251 PRINTS Major pollen allergen Lol pI signature 155 170 IPR005795 GO:0005576|GO:0019953
Mtr4g3543 251 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Mtr4g3543 251 PRINTS Major pollen allergen Lol pI signature 222 239 IPR005795 GO:0005576|GO:0019953
Mtr4g3543 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Mtr4g3543 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Mtr4g3543 251 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 251 - -
Mtr4g3543 251 Gene3D - 145 247 IPR036749 -
Mtr4g3543 251 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3543 Mtr-Chr4 49175394 49177155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3543 1 250 Expansin Gene Family AT4G17030 57.769 3.43e-109 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3543 - - gmx:100779487 464.151