Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3533 ATGGTTTGTGCAGCATGCAAATATCAAAGAAGAAAGTGTTCTCCAAGTTGCGATTTAGCTCCTTATTTTCCAGCCGATAAACCAGAAATCTTCTACAAGGCTCATCGTTTGTTTGGTGTTTCCAACATGGTGAAGATGCTAAAGAATATTGATGATGAACATCTAAAAGATGAAGCAATGAAATCAATTATCTTTGAGTCGGATATGCGTGCAAGATTCCCTGCTACTGGATGTCTCGGTGTTATTCATATGTACGGAGGCATGTTAAAGAAGTCTGTTGATGAGTTAGATCATGTAAGAAATCTACTAGCTTATTGTAAACAACATAATCTTTCTTCTGCACCTTCTACTAGTTCTCATTTTTCAAATACTCCAATTGGTGCAAATTTGAATACAAGTTTTATGGATTCAACAAAGGAAGCACAGCTGAATGGTGACAATGGTGGTGTTGATCCACAGGGAAAACCTTAA 471 0.3694 MVCAACKYQRRKCSPSCDLAPYFPADKPEIFYKAHRLFGVSNMVKMLKNIDDEHLKDEAMKSIIFESDMRARFPATGCLGVIHMYGGMLKKSVDELDHVRNLLAYCKQHNLSSAPSTSSHFSNTPIGANLNTSFMDSTKEAQLNGDNGGVDPQGKP* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3533 156 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 125 - -
Mtr4g3533 156 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 3 125 - -
Mtr4g3533 156 Pfam Lateral organ boundaries (LOB) domain 3 98 IPR004883 -
Mtr4g3533 156 ProSiteProfiles LOB domain profile. 1 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3533 Mtr-Chr4 49051265 49051735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3533 3 103 AS2 family AT3G47870 53.465 2.48e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr4g3533 LOB 4.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3533 - - mtr:MTR_4g099230 326.635