Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3514 ATGTTTCCTCTTTTTCTGAAAATTTTTTCCTTTCCACCTTCTCGTCTTTCTCGCAAGGTTTTTACTACGTTTAAAGTGCGTGGGTTCTCATCATATTCTTCTCCTCCCAAGGTTTCAGTATCAGTATGGTGGCACATTGACAGCTGTCCCGTGCCCTCTGGGTTTAGCTTTTCCAAGGTAGCACCTTCAATTACGGCAGCCGTTAGAGCTAACGGGATTATGGGTACAATTCGTATTCGCGCTTATGGTGATGTCGTCGACAAAGAGGCTCTTAATTCAACCAACATTACTCTACACTCCTTTTTCGACGATTACCCTTTTCCATTGCACAAAACTTATACGGCAACTATAATGTGGGAGTGGTCTTCAATGCTCAATGGGGATGACCTTACAGGAAAACATTTCAACTATCCTCCTGATGGTCCCACTAATTCATGCTATGAAAACTCAAATGCGCCTCTTGAAAACCCCTTCTCAGTTGTTGAGTTGCACACATCTTCACAAAATTCGGAGGAGATATCCAAACCTACCTTGGACATAAAGTCTTTTTCTAGGCAGGTTATGAAAATATTGTGTTCGCATCCAAATGGGATCTCCATAGGAGATCTTCGTGCAGAGTTGACAAAGTGTGATGTGCCTTTGGTTAAACGCTTCTATGGAAATAAAAAGTTTTCCGACTTTCTAATATCTATATCATATGTAGAGCTCCAGTATTTAGGAGGAGATAATTTTTGGGTGTGTTTGGTCCCATCAACGACATCTGCTGTTAAGAATAACCAGAAGGATGGTGCCACAACTCAAAAAGTGCGCAATGACGGTAAAAATATGGATAGAAGTGCAGATGGGGTTCCCAAAATATCCTCATCGTGTGTTAGCAGCGAGGGTGATGATTTAAAATCATTCCAATCTATCCCTTCACAAGGAAAACCTCTCGGGGAATACGCTGATGGTAAATCATCATATTTCTGTAGTTGGATTAGTAGTTGGTGGACATTTTTGAAAAGCAGGGCTAGTCATTTTGAAGAGCCCAAGTCATCAGAACTGCAACAGGATCTTAGTCATCCTCTGCAACCTCATTGGGATAACTTTAAATTTAGGGTTGCAGTATGGTGGGACTTTGACAGCTGTGGCGTCCCCTCCGGCATTAGCTTTTTGAATGTAGCACCTTCAATTATGGGAGTTCTTAGAGCCAACAGGATTAAGGGCCCAATTCATATCGACGCTTATGGCGATGTTTCTCAACTTTCACAGATCAAACAAGAAGCACTTTTCCTATCAGGCATTGATCTCCACCACGTTCCAGGTGGAAAGAACAAGAACAAATGCTTTGTGGATTGGTTTTCTTAA 1347 0.418 MFPLFLKIFSFPPSRLSRKVFTTFKVRGFSSYSSPPKVSVSVWWHIDSCPVPSGFSFSKVAPSITAAVRANGIMGTIRIRAYGDVVDKEALNSTNITLHSFFDDYPFPLHKTYTATIMWEWSSMLNGDDLTGKHFNYPPDGPTNSCYENSNAPLENPFSVVELHTSSQNSEEISKPTLDIKSFSRQVMKILCSHPNGISIGDLRAELTKCDVPLVKRFYGNKKFSDFLISISYVELQYLGGDNFWVCLVPSTTSAVKNNQKDGATTQKVRNDGKNMDRSADGVPKISSSCVSSEGDDLKSFQSIPSQGKPLGEYADGKSSYFCSWISSWWTFLKSRASHFEEPKSSELQQDLSHPLQPHWDNFKFRVAVWWDFDSCGVPSGISFLNVAPSIMGVLRANRIKGPIHIDAYGDVSQLSQIKQEALFLSGIDLHHVPGGKNKNKCFVDWFS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3514 448 CDD LOTUS 180 248 - -
Mtr4g3514 448 CDD PIN_limkain_b1_N_like 40 99 - -
Mtr4g3514 448 PANTHER LIMKAIN B LKAP 15 101 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr4g3514 448 PANTHER LIMKAIN B LKAP 115 306 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr4g3514 448 PANTHER LIMKAIN B LKAP 345 438 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr4g3514 448 CDD PIN_limkain_b1_N_like 366 448 - -
Mtr4g3514 448 Pfam OST-HTH/LOTUS domain 181 241 IPR025605 -
Mtr4g3514 448 MobiDBLite consensus disorder prediction 261 285 - -
Mtr4g3514 448 PANTHER EMB|CAB71880.1 115 306 - -
Mtr4g3514 448 PANTHER EMB|CAB71880.1 345 438 - -
Mtr4g3514 448 PANTHER EMB|CAB71880.1 15 101 - -
Mtr4g3514 448 Pfam NYN domain 366 437 IPR021139 GO:0004540
Mtr4g3514 448 ProSiteProfiles OST-type HTH domain profile. 179 250 IPR025605 -
Mtr4g3514 448 Gene3D - 178 248 IPR041966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3514 Mtr-Chr4 48840988 48846257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3514 361 436 C2H2 Transcription Factor Family AT5G61190 38.750 1.20e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3514 - - mtr:MTR_4g098990 700.664