Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3509 ATGGCACTCTCTCTTTTGTGTTTTGTTCTCATTGCCACCTTTCTTTTCATGCAAACCCTAGCAGATACTTCATGCACCGATTGTTTTGTTCAATCTCATGCATCATTTTACCCAAACTCTGAAGAAAACGGCACAGATACTGGTGCATGTGGATTTGGTTCCTTTGGTGCTACTATTAATGGTGGGGATGTATCGGCTGCATCTAGTCTTTATCGAGATGGAGTTGGCTGTGGCGCTTGTTACCAGGTGAGGTGTACCAACAGTGTTTATTGCTCAGGCAATGGTGTCACGGTAGTTTTAACTGATCAAGGCTCAGGAGATAACACTGACTTCATTCTTAGCCAACGAGCCTTCAGTGGGATGGCTCAGAGCAAGGATGCAGCCACTTCTCTATTAGCTCTTGGTGTAGTTAATATTGAATACAGACGGGTTTCATGTAGCTACCCAAACAAAAACATTACTATTAAGATTGATGAAAGCAGCAGCAATCCTCATTACTTGGCTTTTGTCTTATGGTTTCAACAAGGAAAGAGGGACATAACTGCTGTGCAGCTCTGTGAGACTCAGAACTTTGTCTGCAAGTTACTGGATCGGGATCATGGCGCAGTCTGGACTTCTACCTCTCCACCGAGTGGACCTCTGACTTTAAGGATGTTGTTTAGTACTGAAGATGGAGAAGATACATGGATTGTTCCTGTTAATAACATACCAGAAAACTGGAAGGCTGGAGACACGTATGACTCAGGAGTACAAGTAGACCAGTAG 765 0.4366 MALSLLCFVLIATFLFMQTLADTSCTDCFVQSHASFYPNSEENGTDTGACGFGSFGATINGGDVSAASSLYRDGVGCGACYQVRCTNSVYCSGNGVTVVLTDQGSGDNTDFILSQRAFSGMAQSKDAATSLLALGVVNIEYRRVSCSYPNKNITIKIDESSSNPHYLAFVLWFQQGKRDITAVQLCETQNFVCKLLDRDHGAVWTSTSPPSGPLTLRMLFSTEDGEDTWIVPVNNIPENWKAGDTYDSGVQVDQ* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3509 254 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Mtr4g3509 254 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Mtr4g3509 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Mtr4g3509 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Mtr4g3509 254 Pfam Lytic transglycolase 67 141 IPR009009 -
Mtr4g3509 254 Gene3D - 17 147 IPR036908 -
Mtr4g3509 254 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 6 253 - -
Mtr4g3509 254 SUPERFAMILY Barwin-like endoglucanases 16 150 IPR036908 -
Mtr4g3509 254 Pfam Expansin C-terminal domain 153 236 IPR007117 -
Mtr4g3509 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Mtr4g3509 254 Gene3D - 148 252 IPR036749 -
Mtr4g3509 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Mtr4g3509 254 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
Mtr4g3509 254 PANTHER EXPANSIN-B3 6 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3509 Mtr-Chr4 48794319 48796373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3509 5 250 Expansin Gene Family AT4G17030 43.320 1.92e-60 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3509 - - gmx:100794009 442.965