Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3505 ATGGTTTGTACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTCCTTGAGGGAGACAACACTTCTGTTTCTGAAATAAGAGTAAAGCTTGAGGCCATGGACTATAATGTTTCTATATTCTGTGATGTGAATGAAGCCTTGTCAGCAGTCTCAAGTAGACCTGAAGATTTCCATATAGCTATAGTGGAGGTGAGTTCAAGCAGTTGTGAGGGAGGTTTCAGATTTCTTGAGAATGCCAAGGACTTACCAACCATCATGACTTCAAACAGCGATTGTCTGAACACCATGATGAAGTGCATAGCGCTTGGAGCAGTGGAGTTTCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATTTGGCAGCATGTGGTTCACAAGGCGTTCAATGCTGGGGTAAGTGCGCTGTCTGAATCACTGAAACCTGTCAAGGAATCCGTCGCCTCCATCTTGCAGATTCAAACAGATAACGAACAAAATGAAAGTAAAGCCTCAGTCGAGTTAGAGCAAGTATTGAGGTCTTCTGACAATGACCACCATGAACATTATCCCGCTCCTTCAACCCCACAATTGAAACAGGTGGGAAGATTACTTGATGATGGGGATTGCCAAGAGCAGACTAATTGCTCCACGGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAATTACATGTGAAAATTTGAATGCTGAAAGTATTACTCAACAAACGAAATCTGAAGCTACTTTGGTTCAGAAGGAAGAGGAGGAATTTGCCGACGCTTCTAAGTGTGAGAGTGTTGTTTCACCACAGTTACCAAATGTGAAGGTTCTAAACAACAGTGAAAGTAATACAACGTCTGCAAACAAAGTAGTTGTTCGTAGTCATAAATGTGAAATAAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCGGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAGCAACTAGGCATTGATCACGCTATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGATTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATTTAGAATGCATAAGAGACATATCTTGCCGAAGCAAGAAGATCGGAAATGGCTAAATCCAAGGGATCCAACTCAAAGGAACTATTGTCTTCAAAGACCAATTATGCCCGGTCCTCCATCATATTATTCTAACCATACCCTTCCTCCTCTAGCTCCTTTATATCCCATGTGGGGACAATCTGGAACTCAAACGGCTGGCATGCAGGTTTGGGGCCATTCTGGTTATCCCGTGTGGCAGCCTACAGAAAGTTGGCATTGGAAACCATTTCCGGGGATGCATCCAGATGCATGGGGCTGCCCGGTGTTACCTCCACCTCAACCTCCTTGCTATTCCTACTCTCAGGATATACCTGCAGTGAGTAACGCTAATGCAATGGACTACACATTTAGCATGATGCTACATAGTTCCTTTGACGATTATCCGGCAGAGGAGGTTATTGACAATGTTGTGAAGGAGGCAATAAGTAAGCCATGGCTACCTTTGCCAATAGGCCTCAAACCTCCTTCCACGGATAGTGTGTTGGCTGAGCTTTCAAGACAAGGCATTTCCAGCATCCCTCCAAGCTACAATGGTTCTATTCCCTATTGA 1668 0.4359 MVCTANDLQEWKDFPKGLKVLLLEGDNTSVSEIRVKLEAMDYNVSIFCDVNEALSAVSSRPEDFHIAIVEVSSSSCEGGFRFLENAKDLPTIMTSNSDCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGVSALSESLKPVKESVASILQIQTDNEQNESKASVELEQVLRSSDNDHHEHYPAPSTPQLKQVGRLLDDGDCQEQTNCSTEKESGEHDGESKSVEITCENLNAESITQQTKSEATLVQKEEEEFADASKCESVVSPQLPNVKVLNNSESNTTSANKVVVRSHKCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDHAIPSRILDLMKVEGLTRHNVASHLQKFRMHKRHILPKQEDRKWLNPRDPTQRNYCLQRPIMPGPPSYYSNHTLPPLAPLYPMWGQSGTQTAGMQVWGHSGYPVWQPTESWHWKPFPGMHPDAWGCPVLPPPQPPCYSYSQDIPAVSNANAMDYTFSMMLHSSFDDYPAEEVIDNVVKEAISKPWLPLPIGLKPPSTDSVLAELSRQGISSIPPSYNGSIPY* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3505 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 307 366 IPR017930 -
Mtr4g3505 555 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 543 IPR044825 GO:0003700|GO:0045893
Mtr4g3505 555 MobiDBLite consensus disorder prediction 209 230 - -
Mtr4g3505 555 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 543 - -
Mtr4g3505 555 SMART REC_2 18 128 IPR001789 GO:0000160
Mtr4g3505 555 SUPERFAMILY CheY-like 16 134 IPR011006 -
Mtr4g3505 555 SUPERFAMILY Homeodomain-like 309 367 IPR009057 -
Mtr4g3505 555 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 310 365 IPR006447 GO:0003677
Mtr4g3505 555 Pfam Myb-like DNA-binding domain 313 360 IPR001005 -
Mtr4g3505 555 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Mtr4g3505 555 Gene3D - 306 368 - -
Mtr4g3505 555 Gene3D - 18 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3505 Mtr-Chr4 48727168 48733409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3505 1 552 Response Regulator Gene Family AT4G18020 49.233 1.16e-141 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr4g3505 Myb_DNA-binding 3.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3505 - - mtr:MTR_4g098870 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0498 5 4645366 4651718 Mtr4g3505 4 48727168 48733409 PCT