Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3490 ATGGGTTGTACGGTGAGAGAGAAACACATCAGAGCTAATCGGCGACCACGATCAACGGCGACGGCGAAACCTGATTCCGATTCATCGGAAATCAAAGATGCGATTTCGAAATCCATAGAGGAATCGGGTCTCAAACCCTTCAAATACGATCTTTCTCGTGTTGATTCTTTGAATTCTCACTGTCTGATTCCTATTCCCAATCCAAACCCTAATTCTGATGAACCTGGTTGGGGCTACTGCACTGAGGAGCAATTGGAGGAGATTTTGTTGAAGAATTTGGAGTTTGTTTACAATGAAGCTGTTTCGAAGATTGTTGCTTTGGGTTATGATGAAGATACGGCTTTGAAAGCGGTTTTGAGGAATGGGCATTGTTATGGTGGGATGGATGTTTTGACGAATATTTTGCATAATTCGTTGGCGTTTTTGAATAGTAATAGCGGTGCTTATGTTGGTGTTGGTGTTAATGGTGCTGTTTGTGCTGGTTTTGCTCGTGAGGGTGAGAATATGGATGAGCTTGAACCGGTTTTCGCTGATTTGAAGCATTTGGAGGAGTATTCTTTGGCTGGGATGGTGTGTTTGTTGCAACAGGTTAGGCCGAATTTGAGTAAAGGTGATGCAATGTGGTGTTTGCTAATGAGTGATCTTCATGTTGGGAAAGCTAGTACTATAGAGATTCCTGTGCCGGGGAGTGCGGGTGCGAGGGGAGCTGCTGCTGTTGAATCTGGTGGTGGTGGTGGTGGTGGTAAGGCTCGTACTAAACCGGTTGCTCATAGGTCTTTTCCACCCTGTAAGTTTCATGAGGGGTGGGGATTTGGAAATGGGGATTACCCCACGAATGCGAATGGGATATTGTCTTGTGCTCCGGTTTTGCAGAGGGAGATTGAATTCCCGAAGAGGTTTGATCTTTCTCCGCCAATGAAGTGCTTGTTGAAGAGAAATGTTGCCATGTTTGCTGCTGGTTTTAGAGCAAACACCAAGCAATTGCAGGCGAAGGGGAAGGCCAATGTTCCTGGTCGTAGTGCTGTGTCAAATTTGGATTCTCCGGTTGTATCTGGGGCTGAAACCACGGTTGATCCGTGTGGACACTCTCGGGTTGTTGATAACCAAGAGGCTGTGAACTCGGTGCTGAGTAAATTTCGTGACTTGAATCTTGATGAAAATTTGGAGTTTGTGGCTGAGGATCAGAAGGATGAAGTGATAGTGAGTATATTTCATCAGATAAAGGATTTGGAAAAACAGGCCAAGGAGCGGAAAGAATGGGCTTATCAGAAAGCATTGCAGGCCGCGAAGAAGCTAAGCAGTGATTTGACCGAGCTCAAAACATTACGGATGGATAGAGAGGAGACCCAGAAATTGAAGAAAGGGAAACAGGCACTTGAGGATACAACCATGAAGAGACTCTCGGAGATGGAGAATGCTTTGAGAAAAGCTAGTGGTCAAGTGGACCGTGCAAATGGAGCTGTGAGAAGATTAGAGACTGAGAATGCTGAAATCAGAGCAGAGATGGAGGCCTCCAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTGGAAGTTGCAAAAAAGGAGAAAAAATACTTGAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAAAAGGAGATTTCTGATTTGAAAGAGAAGATATTAGAGGATCGAGAAGTGTCAGCTCAGAATAAGCAGCGCCAAAAAGAAGCTGAGGCTAAATGGAAGGAGGAGTTGAAGGCTCAAGAAGATGCCTTGGCACTAGTTGATGAGGAGCGCCGTTCCAAGGAAGCAGCTGAATCAGATAATAAGAGGGGATTTGAGGCTTTGCGTCTCAAGATAGAATTAGATTTCCAGCGCCACAAGGATGATCTAAGCAGACTTGAGAATGATCTTTCGCGCCTTAAAGCATCTGTTCGATCTGCTGCATTGCATCACCAAAATACTTCACCTATCAAAGACTTTGAGGGTACAAAGCCTCAAAGAGAGACAATTGCTAAGCTGCTTCTGGATTTGGATGATTTATCAGAAAGTGAAGCTAATAACAACAGAGAATGCATTATATGTATGAAGGATGAAGTCTCCGTTGTTTTCTTGCCGTGTGCTCACCAAGTCATGTGTGCTAAATGCAGTGATGAGTATGGGAAGAATGGTAAGGCTGCTTGTCCTTGCTGCCGAGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCATGCTCGTAG 2214 0.4467 MGCTVREKHIRANRRPRSTATAKPDSDSSEIKDAISKSIEESGLKPFKYDLSRVDSLNSHCLIPIPNPNPNSDEPGWGYCTEEQLEEILLKNLEFVYNEAVSKIVALGYDEDTALKAVLRNGHCYGGMDVLTNILHNSLAFLNSNSGAYVGVGVNGAVCAGFAREGENMDELEPVFADLKHLEEYSLAGMVCLLQQVRPNLSKGDAMWCLLMSDLHVGKASTIEIPVPGSAGARGAAAVESGGGGGGGKARTKPVAHRSFPPCKFHEGWGFGNGDYPTNANGILSCAPVLQREIEFPKRFDLSPPMKCLLKRNVAMFAAGFRANTKQLQAKGKANVPGRSAVSNLDSPVVSGAETTVDPCGHSRVVDNQEAVNSVLSKFRDLNLDENLEFVAEDQKDEVIVSIFHQIKDLEKQAKERKEWAYQKALQAAKKLSSDLTELKTLRMDREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANGAVRRLETENAEIRAEMEASKLSASESVTACLEVAKKEKKYLKKLLAWEKQKAKLQKEISDLKEKILEDREVSAQNKQRQKEAEAKWKEELKAQEDALALVDEERRSKEAAESDNKRGFEALRLKIELDFQRHKDDLSRLENDLSRLKASVRSAALHHQNTSPIKDFEGTKPQRETIAKLLLDLDDLSESEANNNRECIICMKDEVSVVFLPCAHQVMCAKCSDEYGKNGKAACPCCRVQIQQRIRVFGACS* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3490 737 PANTHER OS05G0141500 PROTEIN 1 736 IPR046934 -
Mtr4g3490 737 SUPERFAMILY RING/U-box 674 729 - -
Mtr4g3490 737 Coils Coil 422 442 - -
Mtr4g3490 737 SMART ring_2 683 722 IPR001841 -
Mtr4g3490 737 Coils Coil 523 557 - -
Mtr4g3490 737 Coils Coil 467 508 - -
Mtr4g3490 737 Coils Coil 608 635 - -
Mtr4g3490 737 ProSiteProfiles Zinc finger RING-type profile. 683 723 IPR001841 -
Mtr4g3490 737 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 736 - -
Mtr4g3490 737 MobiDBLite consensus disorder prediction 1 31 - -
Mtr4g3490 737 Pfam Zinc finger, C3HC4 type (RING finger) 680 728 - -
Mtr4g3490 737 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 670 734 IPR013083 -
Mtr4g3490 737 Coils Coil 562 589 - -
Mtr4g3490 737 Pfam Family of unknown function (DUF6592) 92 220 IPR046527 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3490 Mtr-Chr4 48549468 48553552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3490 678 733 C3H Transcription Factor Family AT1G73950 42.857 4.17e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3490 - - gmx:100777787 963.755