Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3487 ATGCCAGTTCCACTTGCTCCTTATCCAACTCCACCTCCAGCTCCTGCTCCAGCTCCAGCTCCATATACAACACCTCCAACAAATGGTGCACAGAGTCAACTTGTGTGTTCTGGCTGTAGAAACCTTCTTATGTATCCAGTTGGAGCAACTTCTGTATGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGATGCCATACTTTACTCATGTACATCCGCGGAGCAACAAGTGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTCTGGAAGCAAATCAGGTGGCACATGTAAACTGTGGTAACTGCAGGATGCTACTTATGTATCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTTACCTCAGTTGGGGCCTCAGCAAGCACGACAGAGCCGCAGAAGTTCAGCACCTAA 465 0.4753 MPVPLAPYPTPPPAPAPAPAPYTTPPTNGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEPQKFST* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3487 154 MobiDBLite consensus disorder prediction 1 24 - -
Mtr4g3487 154 PANTHER PROTEIN LSD1 1 150 IPR040319 -
Mtr4g3487 154 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 72 101 IPR005735 -
Mtr4g3487 154 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 110 140 IPR005735 -
Mtr4g3487 154 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 33 63 IPR005735 -
Mtr4g3487 154 MobiDBLite consensus disorder prediction 1 25 - -
Mtr4g3487 154 PANTHER PROTEIN LOL1 1 150 - -
Mtr4g3487 154 SUPERFAMILY Multiheme cytochromes 36 134 IPR036280 -
Mtr4g3487 154 Pfam LSD1 zinc finger 113 137 IPR005735 -
Mtr4g3487 154 Pfam LSD1 zinc finger 36 60 IPR005735 -
Mtr4g3487 154 Pfam LSD1 zinc finger 75 99 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3487 Mtr-Chr4 48510436 48512678 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Mtr4g3487 zf-LSD1 9.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3487 - - qsu:112000975 259.61