Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3484 ATGGATTCCCGCTCAGCACCACCACAACAACCTACTATGATGGTGGGACCCACATCTTACGCTCCAACTAACACCACCATGATCAGCCCCAACTCCTCCACCACCACCACCGCGAACATCATGGCACCCGCTACAGCTCGTTTTCCTTTCGCTTCTCCGCAATCGGAGCCGTTTTCGGTTACTCATGACGGTCCTTCTTCTCCGTCGACGCTTGGGAAGAAGAAACGTGGCCGGCCGAGGAAATACTCGCCTGATGGTAACATTGCTCTTGGTTTGGCTCCTGTTTCTTCTCCTGTTGCTGCTACGTCTGCTGCTTCGGCTGGTGATTCTGGAAACGCCGATGCGCCTCCCAAGAAACATAGAGGAAGGCCGCCTGGCTCTGGGAAGAAGCAGTTAGATGCGCTTGGTGCTGGTGGGACTGGATTCACTCCACACGTAATCTTGGTGGAGTCTGGTGAGGACATTACAGAAAAAGTTATGGCCTTTTCTCAGACGGGGCCTCGCACGGTTTGTATTCTTTCTGCCATTGGTGCAATCAGCAGTGTAATCCTTCGACAGCCAGCTTCAGGCAGTATTGCAAGATATGAGGGTCAATTTGAGATCGTATCGTTATCAGGTCCTATGCCGCTATCTGAAAATAATGGTGAACAAAGCAGAACAAGCAGTTTATACGTTTCTGTTGCAGGGGCTGATGGACGAGTTTTGGGTGGTGCAGTTGCTGGCGAGCTAACTGCAGCGTCAACTGTACAGGTCATTGTGGGTAGCTTTATTGTGGACCGGAAAAAGTCAAGCTCAAGTATGGTGAAATCTGGGCCTTCTTCAGCACCAACTTCCCAAATGTTGAACTTTGGGGCACCTACAACTCCAACTAGTCCCACTTCTCAAGGGCCTTCAACCGAGTCCTCGGAAGAAAATGATCATAATAGTAATTTTAGTAGGGGACCTGGACTCTACAATAATGCTAATCAGCCTGTTCATAATAATATGCAGCAGATGTACCATCATCCACTATGGGCTGGCCAAACTCACCCGTGA 1035 0.4986 MDSRSAPPQQPTMMVGPTSYAPTNTTMISPNSSTTTTANIMAPATARFPFASPQSEPFSVTHDGPSSPSTLGKKKRGRPRKYSPDGNIALGLAPVSSPVAATSAASAGDSGNADAPPKKHRGRPPGSGKKQLDALGAGGTGFTPHVILVESGEDITEKVMAFSQTGPRTVCILSAIGAISSVILRQPASGSIARYEGQFEIVSLSGPMPLSENNGEQSRTSSLYVSVAGADGRVLGGAVAGELTAASTVQVIVGSFIVDRKKSSSSMVKSGPSSAPTSQMLNFGAPTTPTSPTSQGPSTESSEENDHNSNFSRGPGLYNNANQPVHNNMQQMYHHPLWAGQTHP* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3484 344 MobiDBLite consensus disorder prediction 52 68 - -
Mtr4g3484 344 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 256 IPR005175 -
Mtr4g3484 344 ProSiteProfiles PPC domain profile profile. 139 278 IPR005175 -
Mtr4g3484 344 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 36 314 - -
Mtr4g3484 344 CDD DUF296 143 256 IPR005175 -
Mtr4g3484 344 SMART AT_hook_2 73 85 IPR017956 GO:0003677
Mtr4g3484 344 SMART AT_hook_2 118 130 IPR017956 GO:0003677
Mtr4g3484 344 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 314 IPR039605 GO:0003680
Mtr4g3484 344 MobiDBLite consensus disorder prediction 1 138 - -
Mtr4g3484 344 MobiDBLite consensus disorder prediction 1 42 - -
Mtr4g3484 344 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 257 - -
Mtr4g3484 344 Gene3D - 144 270 - -
Mtr4g3484 344 MobiDBLite consensus disorder prediction 263 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3484 Mtr-Chr4 48465819 48473150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3484 73 342 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 47.249 5.18e-69 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3484 - - mtr:MTR_4g098460 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0516 5 4816748 4820119 Mtr4g3484 4 48465819 48473150 PCT