Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3483 ATGGCTGGGTTAGATTTAGGGAGTGCAAGCTTTATGCAAAACATCCACAGGCAAAACTTACACCTTCAACAACAACACCATCACCAAAACCAGCACGATTCTGAAGAACAAGAATCAAATCGTGCCAGTGTTGGTGGTGGTGCACCGTTCTCATCGAACGAAGAAGATGATCGCAGCCAAGGTTTAGAGCTTGGTTCAGCAGCCGGACCAGGAGATGTGGTAGGCCGCCGTCCACGCGGCAGACCGCCGGGATCGAAAAACAAGGCCAAACCACCGGTGATCATCACTCGAGAGAGTGCCAACACTCTCAGAGCTCATATTCTTGAAGTTGCCGGCGGTTCAGATGTTTTTGAATGCGTATCTACCTATGCTCGCCGCCGTCAACGTGGGATCTGTGTTCTCAGCGGCAGTGGCACTGTGACAAATGTCAGTATCCGGCAACCAGCGGCGGCTGGTGGTGTTGTTACGCTACATGGAAGATTTGAGATATTATCCTTGTCTGGATCTTTTCTGCCACCACCAGCTCCTCCCGGAGCAACTAGCTTAACGATTTATCTTGCTGGAGGACAAGGACAGGTGGTGGGAGGTAGCGTGGTTGGTGAGCTTATCGCGGCCGGGCCGGTGATTGTGATTGCAGCTTCTTTTACTAATGTTGCTTATGAGAAATTGCCGTTGGAAGAGGAGCAGCTTCAGATGCAGGCTGAGGCTGGAGGAGGTTCTCAAGGCTCCGGTGGTGGCGGTGGCGGCAATAATAATAACAATCCATTTCCTGATCCATCTTCTGGTTTACCGTTTTTCAATTTGCCATTGAATATGCAGAATGTTCATCAGCTACCTGTTGATGGTTGGGCGGGAAACAACAACAACTCAGCTTCACGTCAACCTTTTTGA 891 0.5017 MAGLDLGSASFMQNIHRQNLHLQQQHHHQNQHDSEEQESNRASVGGGAPFSSNEEDDRSQGLELGSAAGPGDVVGRRPRGRPPGSKNKAKPPVIITRESANTLRAHILEVAGGSDVFECVSTYARRRQRGICVLSGSGTVTNVSIRQPAAAGGVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELIAAGPVIVIAASFTNVAYEKLPLEEEQLQMQAEAGGGSQGSGGGGGGNNNNNPFPDPSSGLPFFNLPLNMQNVHQLPVDGWAGNNNNSASRQPF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3483 296 MobiDBLite consensus disorder prediction 234 263 - -
Mtr4g3483 296 Gene3D - 103 236 - -
Mtr4g3483 296 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 279 IPR014476 GO:0003680
Mtr4g3483 296 SUPERFAMILY AF0104/ALDC/Ptd012-like 100 232 - -
Mtr4g3483 296 MobiDBLite consensus disorder prediction 22 94 - -
Mtr4g3483 296 ProSiteProfiles PPC domain profile profile. 100 236 IPR005175 -
Mtr4g3483 296 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 279 - -
Mtr4g3483 296 CDD DUF296 104 187 IPR005175 -
Mtr4g3483 296 MobiDBLite consensus disorder prediction 233 263 - -
Mtr4g3483 296 PIRSF ESCAROLA 9 296 IPR014476 GO:0003680
Mtr4g3483 296 Pfam Plants and Prokaryotes Conserved (PCC) domain 104 217 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3483 Mtr-Chr4 48455316 48456903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3483 1 296 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.208 8.00e-95 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3483 - - pvu:PHAVU_003G230600g 345.895