Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3482 ATGGAGCAAATCAACAACACACCAATGAACATATCAGCAGACAGCAGCTTGTTATCTGATTTGGAAAAGGTGGGTGAATACATATTTGATGAGGAATGCTACTTGAACTTGCTTGATGCTGATGTGGTAGAAGAGTTTCTCTCACGTGACATGGCTAGTGTCATTGCCTTTGAGGAACAAAGAGAGACCCTGCAACAATGCTTGACTACAGAATGCATTTCCACTACTCTGAGCGAAACATTCAATGGTGAAACAAGTTTTGAGTCTTTTGACTTTGATTTTGAGAATCCAACCAAGAAGCTGAAATTTTTTGATCGAAGTGACAACATAACCAAAAACTTTTCACAGCAACTTTCTGCATCTCCATCCACCTTTCAGTCGTCTCAGATTCCGTCTTTGCCCAATTTGGGAAACACACATTTTTCAGCCCTCCAAACCTCAAAAGAGTCTTCAAAAAATCAAAACGTGGAAACTAAAACATCACAATCTAAGAGGTCTTCGGCTCATGTAAAAGATCACATTATGGTCGAGAGAAAACGAAGAGAGAAACTCGGTCAAGCCTTCATTGCTCTTGCAACACTCATTCCTGACCTAAAGAAGAAGGACAAGGCTTCAGTATTAGCAGATACAATTAAACATATCAAAGAGCTTAAAGAGCGTTTGGCAATTTTAGAAGAAGTAGGGAAGAACACAAAGGAAGATCAATCGATGATGGTTTGTAACAAACCAGACCATTGTTGTGAAACTGAAAGTGTTGGTGATGGCACTGCTATCAAGGTAGCAGCAAAAGTGTCCGGGAAAAAGATGTTGATTCGGATCCATTGCCAAAAACATGATGGACTTCTTGTTAAAGTAATCACAGAGATACAAAGTTTTCAACTATTAGTTGTCAATAACCGTATTTTAGCTTTTGGAGATTCTTTCCACGACATTACAGTCATTGCTGAGATTGGTGAAGGCTACAACTTGACCATAAAAGAACTCGTTCGTAATCTACGCATGGCAGCATTAAAGTTTATGTCATCGTAA 1029 0.3907 MEQINNTPMNISADSSLLSDLEKVGEYIFDEECYLNLLDADVVEEFLSRDMASVIAFEEQRETLQQCLTTECISTTLSETFNGETSFESFDFDFENPTKKLKFFDRSDNITKNFSQQLSASPSTFQSSQIPSLPNLGNTHFSALQTSKESSKNQNVETKTSQSKRSSAHVKDHIMVERKRREKLGQAFIALATLIPDLKKKDKASVLADTIKHIKELKERLAILEEVGKNTKEDQSMMVCNKPDHCCETESVGDGTAIKVAAKVSGKKMLIRIHCQKHDGLLVKVITEIQSFQLLVVNNRILAFGDSFHDITVIAEIGEGYNLTIKELVRNLRMAALKFMSS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3482 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 231 IPR036638 GO:0046983
Mtr4g3482 342 Gene3D - 139 234 IPR036638 GO:0046983
Mtr4g3482 342 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 7 341 - -
Mtr4g3482 342 Pfam Helix-loop-helix DNA-binding domain 173 218 IPR011598 GO:0046983
Mtr4g3482 342 Coils Coil 207 234 - -
Mtr4g3482 342 MobiDBLite consensus disorder prediction 145 163 - -
Mtr4g3482 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Mtr4g3482 342 SMART finulus 174 223 IPR011598 GO:0046983
Mtr4g3482 342 PANTHER BHLH TRANSCRIPTION FACTOR 7 341 - -
Mtr4g3482 342 MobiDBLite consensus disorder prediction 145 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3482 Mtr-Chr4 48407587 48411436 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3482 134 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.161 3.16e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g3482 HLH 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3482 - - mtr:MTR_4g098035 659.062