Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3480 ATGGAGGAAATCAACAACACACCAATGAACGTATCAGAAGAAACCAGCAAATGGCTATCTGATTTGGAAATGGATGAGTATAATTTATTTCCTGAAGAATGCAACCTAAACTTCCTTGATGCTGATGAGGAAGAGTTTCTTCCACAAGAACAAACCCAACAACAATGTTTGAGTTCAGAGTCCAATTCCACAACTTTCACCAACTCATTCACTGATGAAACAAATTTTGACTCTTTTGACTTTGATTTTGAAATTGAGAGACCAACCATGGAGCTGAACACAATCTTTAGTGACAACAGCATCATTGAAACCATTTCACCAAAACTTTCTCCATCATCATCTAACTCATCTTTGCACTCTCAGATTTTGTCTTTTGACAACCTCCCAAATTCACCTGCTACCAACACCCCTCAATTTTGTGGACTCACCCCTACCTTAATCTCAAAGTCAAAACAAAACAAAACAGTGTTAGTGTCTCCACCCCAAATAAGAAACATTCATGTCTCAACTCAAAATCCTATAGGGTTATCCAAAAATCAAAACTTTGCAACAAAAACCTCTCAAACCAAAAGGTCTCGAGCCAACGCTGATGATCATATCATGGCTGAGAGAAAGCGAAGAGAGAAACTTAGCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCTAACTTGAAAAAGATGGACAAGGCTTCTGTATTAGCTGAGTCTATAATCTACGTGAAAGAGCTTAAAGAGCGTTTGGAAGTTTTGGAAGAACAAAACAAGAAAACAAAGGTAGAGTCCGTGGTTGTTCTGAAGAAACCAGACCATAGTATCGATGATGATGATGATGATGATGATAACTCATCATGTGATGAGAGTATTGAAGGTGCTACTGATTCATCCGTACAAGTGCAAGCAAGAGTGTCAGGGAAAGAGATGCTGATTCGGATTCACTGCGAGAAGCACAAGGGAATTCTGGTGAAAGTCATGGCTGAGATTCAAAGCTTTCAATTGTTTGCTGTGAATAGTAGTGTCTTACCCTTTGGGGATTCCATTGACATTACTATCATTGCTGAGATGGGTGAAAGGTACAACTTGAGCATAAAGGAACTTGTCAAGAACCTACACATGGCAGCATTGAAGTTTATGTCATCAAAAATCACAGACTGA 1152 0.3915 MEEINNTPMNVSEETSKWLSDLEMDEYNLFPEECNLNFLDADEEEFLPQEQTQQQCLSSESNSTTFTNSFTDETNFDSFDFDFEIERPTMELNTIFSDNSIIETISPKLSPSSSNSSLHSQILSFDNLPNSPATNTPQFCGLTPTLISKSKQNKTVLVSPPQIRNIHVSTQNPIGLSKNQNFATKTSQTKRSRANADDHIMAERKRREKLSQSFIALAALVPNLKKMDKASVLAESIIYVKELKERLEVLEEQNKKTKVESVVVLKKPDHSIDDDDDDDDNSSCDESIEGATDSSVQVQARVSGKEMLIRIHCEKHKGILVKVMAEIQSFQLFAVNSSVLPFGDSIDITIIAEMGERYNLSIKELVKNLHMAALKFMSSKITD* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3480 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Mtr4g3480 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 260 IPR036638 GO:0046983
Mtr4g3480 383 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 6 378 - -
Mtr4g3480 383 Coils Coil 233 260 - -
Mtr4g3480 383 PANTHER BHLH TRANSCRIPTION FACTOR 6 378 - -
Mtr4g3480 383 MobiDBLite consensus disorder prediction 269 292 - -
Mtr4g3480 383 Pfam Helix-loop-helix DNA-binding domain 199 243 IPR011598 GO:0046983
Mtr4g3480 383 Gene3D - 183 260 IPR036638 GO:0046983
Mtr4g3480 383 SMART finulus 200 249 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3480 Mtr-Chr4 48392293 48394998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3480 15 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.584 7.07e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g3480 HLH 8.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3480 - - mtr:MTR_0011s0210 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3480 4 48392293 48394998 Mtr4g3480 4 48392293 48394998 ECH