Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3479 ATGAGTTCTATGGAGGAATCGTGGACTAATTGGTTGTGTGATATGGAACCAAATGATTACAGTTTCATCAACCAATCAAGCATAAATGCAGAAATTGTTGGTAGTTTAGAGAGTAACTTAGAGAGGCCTTCAAAATTACTCAAAACTACTACTACTTGTAGTTCAAGCTATATGAAAACAGAACATCTCTCACAAAAAACAGCTTCATATGTTTTTTCGTTTGAAAACGAGAATCCACCACCAAGAAAAGTTGAACCAGCCTTGAAGCCAAAAACCAAAGTTGTGAACTCAAAGAATGGTCCACGACGTGTAAAGAATAATGAGAGCAACAAGAAGAACGGTTCATTTTCTAAATCTACAACAACTCATCACACACCAGATCATATAATTGCTGAGAGAATAAGGAGGGAAAAGATTAGCCAACTATTCATAGCTCTTTCAGCCCTTATTCCAAACCTCAAAAAGATGGACAAGGCCTCAGTGTTGGGTGATGCCATAAAGTATGTGAAGGAGCTTAAGGAGCAAGTGAAAATGTTGGAGGAGCAAAGTAAAAGTGTAGAACCAGTTGTGGTTGTGAAGAAACTGTCTGAACTGTCTTCAGATGAAGATGTTTCGGACACTTCGTCAAATTCATGTAATGGAAACTCTGATGAAACATCAAAAACAAATCTGTCACTGCCTGAAGTTGAAGCTAGCTTGTCGGGGAAGAATGTGCTGATCCGAATCCTCTGTGAGAAAGATAAGGCAGTGATGGTGAATGTATATAGAGAAATAGAGAAACTTCATCTCTTGGTTATCAATGCTAGTTCCTTTTCATTTGGTTCCTCTGCTCTGGCCATAACCATCATTGCCCAGATGGAGAATGAATTGAACATGAGCATCCAGCAACTGGCAAAAAAACTGAGAGTTGGACTAGTGCAATTGAATTAG 930 0.3871 MSSMEESWTNWLCDMEPNDYSFINQSSINAEIVGSLESNLERPSKLLKTTTTCSSSYMKTEHLSQKTASYVFSFENENPPPRKVEPALKPKTKVVNSKNGPRRVKNNESNKKNGSFSKSTTTHHTPDHIIAERIRREKISQLFIALSALIPNLKKMDKASVLGDAIKYVKELKEQVKMLEEQSKSVEPVVVVKKLSELSSDEDVSDTSSNSCNGNSDETSKTNLSLPEVEASLSGKNVLIRILCEKDKAVMVNVYREIEKLHLLVINASSFSFGSSALAITIIAQMENELNMSIQQLAKKLRVGLVQLN* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3479 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 186 IPR036638 GO:0046983
Mtr4g3479 309 Coils Coil 162 182 - -
Mtr4g3479 309 Gene3D - 123 195 IPR036638 GO:0046983
Mtr4g3479 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Mtr4g3479 309 MobiDBLite consensus disorder prediction 79 127 - -
Mtr4g3479 309 MobiDBLite consensus disorder prediction 201 224 - -
Mtr4g3479 309 MobiDBLite consensus disorder prediction 110 124 - -
Mtr4g3479 309 PANTHER BHLH TRANSCRIPTION FACTOR 4 32 - -
Mtr4g3479 309 PANTHER BHLH TRANSCRIPTION FACTOR 36 309 - -
Mtr4g3479 309 SMART finulus 129 178 IPR011598 GO:0046983
Mtr4g3479 309 Pfam Helix-loop-helix DNA-binding domain 128 172 IPR011598 GO:0046983
Mtr4g3479 309 MobiDBLite consensus disorder prediction 202 224 - -
Mtr4g3479 309 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 36 309 - -
Mtr4g3479 309 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 4 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3479 Mtr-Chr4 48356444 48358673 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3479 9 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.253 4.02e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g3479 HLH 6.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3479 - - mtr:MTR_4g097950 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0522 5 4896701 4901112 Mtr4g3479 4 48356444 48358673 PCT