Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3478 ATGATTCAAATTTCATCCACCAACTACATGCCTGAATTTGGATTAATGGAGGACACTACTTTGTTTAGTGATCATGAATACCAAATGGATTCATATGCATTCCAGTTTGATGATATGGCATACTTCAAGTCTTTCTCAGAATCCCCACAAGAGAGTACTTATTCCTCTCATACCAACATCAACAACAAGCGAATCCATTCCGAAAGCACACAGAACAGTTCTTTCCCTACTCAAAGTCCAGATCAATCTGTTGCCTCAGCAACACCACCAACTAAACTACTCAAGGCTTCTCCCAAAATCATTTCATTTGATTACTCGAATAATGATTCAAAGGTTAAGAAGCCTAAAACCGAGATCGGGTATGGTGAAAACTTGAATTTTGGAAGTGTGATTTCTCAAGGTGATTATTATAAACGAGAGAACAAGGTTTCTGCTGTAAATAGAAACCCTATGCAGGCTCGAGATCATGTTATCGCCGAAAGAAAACGAAGGGAAAAGCTTAGCCAGAGATTCATTGCACTTTCCTCTATTCTTCCTGGACTCAAAAAGATGGACAAGGCAACTATTTTAGAAGATGCTATAAAACATATGAAGCAACTACAGGAAAGAGTAAAGACTTTAGAGGAACAAGTAGCCGATAAAAAAGTCGAATCAGCAGTTTTTGTGAAGAGATCAATCCTCTTCGACAATAATGATAGCTCCTCTTGCGACGAAAACTCCGACCAATCACTCCCGAAAATCGAAGCAAGAGTTTCTGGAAAAGACATGCTCATCAGAATCCATGGTGATAAACATTGCGGCCGATCTGCGGCCGCAATACTCAACTTATTGGAAAAGCATCATCTCACAGTTCAAAGTAGTTCTATTTTACCATTTGGAAATAACTATGTTGATATAACCATTGTTGCTCAGATGAACAAAGAATATTGCTTGACAATAAAGGATCTTGTAAGAAGCATAAATCAGGTTTTGAGGCAGCTTATTTGA 987 0.383 MIQISSTNYMPEFGLMEDTTLFSDHEYQMDSYAFQFDDMAYFKSFSESPQESTYSSHTNINNKRIHSESTQNSSFPTQSPDQSVASATPPTKLLKASPKIISFDYSNNDSKVKKPKTEIGYGENLNFGSVISQGDYYKRENKVSAVNRNPMQARDHVIAERKRREKLSQRFIALSSILPGLKKMDKATILEDAIKHMKQLQERVKTLEEQVADKKVESAVFVKRSILFDNNDSSSCDENSDQSLPKIEARVSGKDMLIRIHGDKHCGRSAAAILNLLEKHHLTVQSSSILPFGNNYVDITIVAQMNKEYCLTIKDLVRSINQVLRQLI* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3478 328 SMART finulus 157 206 IPR011598 GO:0046983
Mtr4g3478 328 MobiDBLite consensus disorder prediction 67 90 - -
Mtr4g3478 328 PANTHER BHLH TRANSCRIPTION FACTOR 5 327 - -
Mtr4g3478 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Mtr4g3478 328 PANTHER TRANSCRIPTION FACTOR NAI1 5 327 - -
Mtr4g3478 328 Pfam Helix-loop-helix DNA-binding domain 155 201 IPR011598 GO:0046983
Mtr4g3478 328 CDD bHLH_AtNAI1_like 153 225 - -
Mtr4g3478 328 Gene3D - 142 216 IPR036638 GO:0046983
Mtr4g3478 328 Coils Coil 190 217 - -
Mtr4g3478 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 218 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3478 Mtr-Chr4 48350714 48352929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3478 96 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.443 6.10e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g3478 HLH 7.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3478 - - mtr:MTR_4g097920 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3478 4 48350714 48352929 Mtr4g3478 4 48350714 48352929 ECH
Mtr5g0526 5 4937824 4939781 Mtr4g3478 4 48350714 48352929 PCT