Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3465 ATGGGGAGAGCTCCTTGTTGTGACAAAGCCAATGTCAAGAGAGGTCCATGGTCACCTGAAGAAGACTCCAAACTCAAAGCTTATATTCAACAACATGGTACAGGTGGTAACTGGATAGCCCTGCCAAAGAAAATAGGTCTCAAAAGGTGTGGAAAAAGTTGTCGTCTTAGATGGCTAAATTATCTTCGTCCCAACCTTAAACATGGGAGTTTCTCCGAAGAAGAAGATAACATTATTTGCAGCCTCTATGTCAATATTGGAAGCAGGTGGTCCATTATAGCAGCGCAATTACCAGGACGAACGGATAATGATATAAAGAACTATTGGAACACAAAGTTGAAGAAGAAACTTTTAACAAAGCAAAGGAAGGAGCAACAATCTCAAGCTCGCCGAGTTTTCAACCAAAACCAAGAGATCAAAAGAGAGAGTGGAAATTCGGTATGGCCTATTGGATTTATCGGTCAAACTCCAAATTATTGGCCAACACAGCACAATTCCTTTCCCAATATTCCAGTAACAAATCCTTCTTCCATCCAAAACTATAACCTCAAGGAAGTTGAATTCTATGATGATCATCAACTGCAGCCAGTAAATGCAAACAATAATTGTCAATATCCATGTGACATTTACTTCCAACAAGACCAATTGTATTGTCCTTCTACAATGAACAGCATAAACTCTGCAGGGTTGACCTATGTGAACCAGCAACAACTAGATGGATCGATCTCGACTTCGACAGAAAGCAGTAGTTGGGGAGATATGAGTTCTTTGATTCACTCACCTTTGGCTTCTGATTATGAAGGTGGCCACCAACAAACAATGATTCAAGAAGATTTTACTTTTGACGAGTCTATGTTCTATGGAATGATCCAAACGCAATAG 882 0.3991 MGRAPCCDKANVKRGPWSPEEDSKLKAYIQQHGTGGNWIALPKKIGLKRCGKSCRLRWLNYLRPNLKHGSFSEEEDNIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLTKQRKEQQSQARRVFNQNQEIKRESGNSVWPIGFIGQTPNYWPTQHNSFPNIPVTNPSSIQNYNLKEVEFYDDHQLQPVNANNNCQYPCDIYFQQDQLYCPSTMNSINSAGLTYVNQQQLDGSISTSTESSSWGDMSSLIHSPLASDYEGGHQQTMIQEDFTFDESMFYGMIQTQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3465 293 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr4g3465 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mtr4g3465 293 Coils Coil 122 142 - -
Mtr4g3465 293 Gene3D - 70 143 - -
Mtr4g3465 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Mtr4g3465 293 Gene3D - 7 68 - -
Mtr4g3465 293 CDD SANT 16 62 IPR001005 -
Mtr4g3465 293 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mtr4g3465 293 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mtr4g3465 293 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mtr4g3465 293 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Mtr4g3465 293 CDD SANT 70 110 IPR001005 -
Mtr4g3465 293 SMART sant 13 64 IPR001005 -
Mtr4g3465 293 SMART sant 67 115 IPR001005 -
Mtr4g3465 293 PANTHER OS09G0431300 PROTEIN 1 228 - -
Mtr4g3465 293 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3465 Mtr-Chr4 48172847 48174298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3465 1 260 MYB Transcription Factor Family AT3G49690 50.164 2.40e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g3465 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3465 K09422 - gmx:100791406 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0538 5 5118262 5120060 Mtr4g3465 4 48172847 48174298 PCT