Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3461 ATGAAGAGAATGGAAAACAATGATGATAGTGTTGACATTAACAATGAAAATAACTGGTTAGGTTTTTCACTCTCTCCTCAAATGAATAATATTGGTGTTTCTTCACACACTCATCATCATTCACTACCTTCTGCTACTGCTACTGCTTCTGAAGTAGTTCCACTTCAAGCAAGCTTTTACCATTCTTCACCTCTTAGTAACTTTTGTTACTCTTATGGACTTGAACATGAAAATGCTGGCTTGTATTCATTACTTCCCATTATGCCTCTCAAATCTGATGGATCTCTTTTTGAAATGGAAGCTCTTAGCAGGTCACAAACACAAGCAATGAGTACTACTTCAGCACCAAAACTAGAGAATTTTTTAGGTAATGAAGCTATGGGGACCCCTCATTATGCATGTAGTAGTACTGTGACAGAAACAATGCCTTTGAGTTTAGACAGCATGTTCCAAAATCAAATTCAACAAAACATGAACATGAACAACCAACAACATTTGTCATATTATAACTCAACTTTGAGAAACCATGAGTTGATGTTAGAAGGGTCAAAGCAAAGTCAAACATCAAGTGGAAATTTCCATCAATCAAACATGGGTGAAGATCATGGACTTAGTGGTTTAAAGAACTGGGTTTTAAGGAATTTTCCAGCTAGTCATGGACATGATCAGTCAAAGATGATTGTTCCCGTTGTAGAGGAAAATGAAGGTGAATGTGGATCCAATATTGGATCAATGGCTTATGGAGATTTGCATTCTTTGAGCTTGTCAATGAGTCCTAGCTCTCAGTCTAGCTGTGTTACAACCTCTCAGAATATGTCATCTGCTGTTGTTGAAAATTCTGTTGCTATGGATACAAAGAAAAGAGGAAGTGAAAAATTTGAGCAGAAGCAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACCTCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATTTATGGGACAACAGTTGCAAGAAAGAAGGCCAAAGCAGAAAAGGAAGACAAGTTTATCTTGGTGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTCAAGTATTGGGGACCATCTACTCACATAAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAATATGACAAGACAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGGGCATCCATGTACAGAGGAGTAACAAGACATCACCAACATGGAAGATGGCAAGCTAGAATTGGTAGAGTGGCTGGTAATAAAGATCTATATCTTGGAACTTTCAGTACTCAAGAGGAAGCAGCTGAAGCCTATGACATTGCAGCTATAAAATTCAGAGGAGCTAATGCAGTGACCAACTTTGATATAATAAAATATGATGTTGAAAAAATCATGGCTAGTAGTAACCTTCTTAACATTGAACAAGCTAGAAGGAACAAAGAGGTGGTAGATATTAGTTCAACTCAATACATTGATCAGAACAAGCCTTCTTCTGCATATGACAACAACAGCACTCAAGAAGCCATTTCAATGCAGAAGAGTATGGTTCTGTATCAATCCTCCCAACATCAACAACTTCAACAGAATCAACCAAGATTTGAGAATGAAAGAACTCATCAAACTTTTTCCTCAGTGTCTTTGGATAACATGTTTCATCAAGAAGTAGTTGAGGAAGCAAGTAAGATGAGAACACATGTGTCAAATGCTTCTTCATTGGCTACAAGTTTGAGTAGTTCAAGAGAAGGTACTCCAGATAGAACAAGCTTGCAAAATCTCTCTGGAATAATGCCTTCAACAGCTTCAAAACTATTGGTTACTTCTGCTCCAAATAGTAATTTGAATTCTTGGGACCCTTCACAACATCTTAGGCCTTCCCTTTCTTTGCCTCAGATGCCAGTTTTTGCTGCATGGACTGATGCATAG 1977 0.3758 MKRMENNDDSVDINNENNWLGFSLSPQMNNIGVSSHTHHHSLPSATATASEVVPLQASFYHSSPLSNFCYSYGLEHENAGLYSLLPIMPLKSDGSLFEMEALSRSQTQAMSTTSAPKLENFLGNEAMGTPHYACSSTVTETMPLSLDSMFQNQIQQNMNMNNQQHLSYYNSTLRNHELMLEGSKQSQTSSGNFHQSNMGEDHGLSGLKNWVLRNFPASHGHDQSKMIVPVVEENEGECGSNIGSMAYGDLHSLSLSMSPSSQSSCVTTSQNMSSAVVENSVAMDTKKRGSEKFEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIIKYDVEKIMASSNLLNIEQARRNKEVVDISSTQYIDQNKPSSAYDNNSTQEAISMQKSMVLYQSSQHQQLQQNQPRFENERTHQTFSSVSLDNMFHQEVVEEASKMRTHVSNASSLATSLSSSREGTPDRTSLQNLSGIMPSTASKLLVTSAPNSNLNSWDPSQHLRPSLSLPQMPVFAAWTDA* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3461 658 MobiDBLite consensus disorder prediction 581 608 - -
Mtr4g3461 658 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 656 - -
Mtr4g3461 658 SUPERFAMILY DNA-binding domain 414 473 IPR016177 GO:0003677
Mtr4g3461 658 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 15 656 - -
Mtr4g3461 658 CDD AP2 414 474 IPR001471 GO:0003700|GO:0006355
Mtr4g3461 658 ProSiteProfiles AP2/ERF domain profile. 313 379 IPR001471 GO:0003700|GO:0006355
Mtr4g3461 658 MobiDBLite consensus disorder prediction 580 608 - -
Mtr4g3461 658 CDD AP2 312 379 IPR001471 GO:0003700|GO:0006355
Mtr4g3461 658 PRINTS Ethylene responsive element binding protein signature 314 325 IPR001471 GO:0003700|GO:0006355
Mtr4g3461 658 PRINTS Ethylene responsive element binding protein signature 455 475 IPR001471 GO:0003700|GO:0006355
Mtr4g3461 658 SUPERFAMILY DNA-binding domain 312 381 IPR016177 GO:0003677
Mtr4g3461 658 Pfam AP2 domain 416 465 IPR001471 GO:0003700|GO:0006355
Mtr4g3461 658 Pfam AP2 domain 313 371 IPR001471 GO:0003700|GO:0006355
Mtr4g3461 658 Gene3D AP2/ERF domain 415 475 IPR036955 GO:0003700|GO:0006355
Mtr4g3461 658 Gene3D AP2/ERF domain 312 381 IPR036955 GO:0003700|GO:0006355
Mtr4g3461 658 ProSiteProfiles AP2/ERF domain profile. 415 473 IPR001471 GO:0003700|GO:0006355
Mtr4g3461 658 SMART rav1_2 415 479 IPR001471 GO:0003700|GO:0006355
Mtr4g3461 658 SMART rav1_2 313 385 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3461 Mtr-Chr4 48118258 48122168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3461 1 526 AP2-EREBP Transcription Factor Family AT4G37750 52.962 2.46e-164 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mtr4g3461 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3461 K09285 - gmx:100792451 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0541 5 5181691 5185326 Mtr4g3461 4 48118258 48122168 PCT