Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3444 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCACTGAAAGCTGGAGTAGTCAAACACGGGGCTGGAAAATGGCGCACAATACTTATGGATCCCGAGTTCAGTTCCATTTTGCGTACGCGTTCGAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAACTTGCCCTTAAAAACAGTCCCCCAGCCCCCAAAACTGACAATAACCAATTGGCCTTGGGTAAAGTAGTTCAACGTGAAGACTTTCTCGATATTAAGCCCCTGACAATTTCTGGTGGAACATTTCAATCTCCTAAGCCCCTAACAATTTGTAGTGGAACATTGCAATCTCCTAATTCAAAAGAACAAGTATCAAGGTTCAAGAACTTTCAGTTGGGAGATAATAATGTATTAGAGGCTATTGTCAATATGAAGGAGCCAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTACATAGAGGAAAAATATCAGTGTCCACCAAATCTTAGAAAGTTATTGTCAGCAAAATTGCAGCAGATGGTGACAAGTGGCAAAATAGTTCAGGAAAAGCATAAGTACAAAATTATGCCAAGTTCAGCAGTCTCTGAGAAAAGAGGAAGCTCTTCTCTGATGCTTGTGGAAGCGAGGTCCAAAGATTCTCCGGAGGTGGAGAAGATGTGTGATGTCAACATCCTTTCAAAATCCCAAATTGAGGCAGAGCTATCAAAAGTGAGGGGGATGTCAGCTCAAGAGGCGGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGTTGCCATTGCACAGGCCGAAGCAGCAGCTAGGGAGGCGGAGATTGCAGAAGCTGAAGCTGAGGCCGCTCAAGTCTTTGCAAAAGCTGCGATGAAGGCACTCAAATGCAAAATGCTTCATATTTGA 942 0.4448 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTAIWGSRQKAKLALKNSPPAPKTDNNQLALGKVVQREDFLDIKPLTISGGTFQSPKPLTICSGTLQSPNSKEQVSRFKNFQLGDNNVLEAIVNMKEPKGSDKAAIASYIEEKYQCPPNLRKLLSAKLQQMVTSGKIVQEKHKYKIMPSSAVSEKRGSSSLMLVEARSKDSPEVEKMCDVNILSKSQIEAELSKVRGMSAQEAAAAAAKAVAEAEVAIAQAEAAAREAEIAEAEAEAAQVFAKAAMKALKCKMLHI* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3444 313 Coils Coil 261 300 - -
Mtr4g3444 313 PANTHER SINGLE MYB HISTONE 4 1 313 IPR044597 GO:0003691
Mtr4g3444 313 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 133 205 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr4g3444 313 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Mtr4g3444 313 Gene3D - 2 59 - -
Mtr4g3444 313 SUPERFAMILY Homeodomain-like 2 63 IPR009057 -
Mtr4g3444 313 SMART h15plus2 131 200 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr4g3444 313 CDD SANT_TRF 6 57 - -
Mtr4g3444 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Mtr4g3444 313 SMART sant 4 59 IPR001005 -
Mtr4g3444 313 Gene3D - 142 217 IPR036388 -
Mtr4g3444 313 SUPERFAMILY "Winged helix" DNA-binding domain 143 214 IPR036390 -
Mtr4g3444 313 PANTHER MYB TRANSCRIPTION FACTOR 1 313 - -
Mtr4g3444 313 Pfam linker histone H1 and H5 family 145 198 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr4g3444 313 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3444 Mtr-Chr4 47947860 47953122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3444 1 310 Single Myb Histone (SMH) Gene Family AT5G67580 50.323 6.71e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr4g3444 Linker_histone 3.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3444 K09422 - gmx:100779583 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0554 5 5308387 5315179 Mtr4g3444 4 47947860 47953122 PCT