Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3440 ATGGATACGCTGTTTAGGCTTGTCAATTTTCAACAACAACAACAACAATATCAACCTGATCCTTCCCTCAACTCCACCACCACCTTAACAACTTCTAGCAGCTCTAGATCCTCAAGACAAACAACATATCATTATTACAACCAACAAGAAGAAGACGAAGAATGCTTCAACAACTTTTATTACATGGATCATAATAACAACAATGATGAAGATTTATCCTCATCTTCTTCTAAACAACACTATTATACTTATCCTTATGCTTCCACTACTACTATCACTACTCCAAACACTACTTATAATACTATCAACACCCCCACCACAACTGATAATTACTCTTTCTCACCCTCCCATGATTACTTCAACTTTGAATTCTCCGGTCACTCTTGGTCACAAAACATCCTCCTTGAAACTGCACGTGCATTTTCCGACAATAACACAAACCGAATCCAACAACTCATGTGGATGCTAAACGAGCTTAGTACCCCATATGGTGACACAGATCAAAAACTTTCATCTTATTTTCTTCAAGCTTTGTTTAGTCGCATGAACGACGCGGGAGATAGAACCTACAAAACCTTAACAACCGCGTCGGAAAAAACATGTTCCTTTGATTCAACGAGGAAGATGTTGTTGAAGTTCCAAGAAGTTAGTCCATGGACAACGTTTGGACACGTGGCAGCTAACGGTGCTATCTTAGAAGCATTGGAAGGTAACCCTAAACTTCACATAATTGATATTAGCAACACTTATTGCACTCAATGGCCAACACTCCTCGAAGCGTTGGCCACCCGCTCTGATGATACGCCTCACCTTCGTTTAACCACTGTAGTCACTGCAATCAGCGGTGGCTCGGTGCAAAAAGTCATGAAGGAAATTGGTTCAAGGATGGAAAAATTTGCTAGGCTTATGGGAGTGCCGTTTAAATTCAAAATCATTTTCAGTGATTTAAGAGAGTTGAATTTGTGTGATTTAGATATTAAAGAAGATGAAGCTTTGGCTATAAACTGTGTAAACTCTTTACATTCGATATCCGGAGCCGGAAACCACCGTGATTTGTTTATATCTTTGCTTCGTGGGTTAGAACCTAGGGTTTTAACTATTGTTGAAGAAGAAGCTGATTTAGAAGTTTGTTTTGGTTCGGATTTCGTGGAAGGTTTTAAAGAGTGTTTAAGATGGTTTAGGGTTTATTTTGAAGCACTTGATGAAAGTTTTTCAAGAACAAGTAGTGAGAGGTTGATGCTAGAAAGAGAAGCTGGGAGAGGTATTGTTGATTTGGTTGCTTGTGATCCTTATGAGTCAGTGGAGAGACGTGAAACGGCGGCGCGGTGGAGGAGGAGGTTGCATGGTGGCGGGTTTAATACGGTGTCGTTTAGTGATGAAGTTTGTGATGATGTTAGGGCTTTATTGAGAAGGTATAAAGAAGGGTGGTCGATGACATCCTCCGATGGTGATACCGGAATATTCTTGTCGTGGAAGGATAAGCCGGTGGTGTGGGCCAGTGTATGGAGGCCTTGA 1515 0.4086 MDTLFRLVNFQQQQQQYQPDPSLNSTTTLTTSSSSRSSRQTTYHYYNQQEEDEECFNNFYYMDHNNNNDEDLSSSSSKQHYYTYPYASTTTITTPNTTYNTINTPTTTDNYSFSPSHDYFNFEFSGHSWSQNILLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTLTTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWKDKPVVWASVWRP* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3440 504 ProSiteProfiles GRAS family profile. 121 503 IPR005202 -
Mtr4g3440 504 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 503 IPR005202 -
Mtr4g3440 504 MobiDBLite consensus disorder prediction 13 42 - -
Mtr4g3440 504 PANTHER PROTEIN SHORT-ROOT 1 503 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Mtr4g3440 504 Pfam GRAS domain family 132 503 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3440 Mtr-Chr4 47917780 47919692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3440 1 504 GRAS Transcription Factor Family AT4G37650 57.116 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr4g3440 GRAS 5.4e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3440 - - cam:101506038 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3440 4 47917780 47919692 Mtr4g3440 4 47917780 47919692 ECH
Mtr5g0559 5 5370421 5372322 Mtr4g3440 4 47917780 47919692 PCT