Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3430 ATGAGTTGCAATGGGTGCCGAGTTCTTCGAAAAGGTTGCAGTGAGTCGTGTATTTTACGACCTTGTTTGCAATGGATCGAAACTCCAGAAGCTCAAGGCCACGCTACTGTTTTCGTAGCAAAATTCTTTGGTCGGGCTGGTCTCATGTCCTTCATTTCCAACGTCCCTGAACCACAGAGACCAGCTCTGTTTCAGTCTCTACTGTTTGAAGCGTGTGGGAGAACGGTTAACCCTGTGAACGGTGCTGTTGGACTTCTTTGGACTGGAAACTGGCACGTGTGTCAAGCAGCAGTTGAGACGGTTCTTCGCGGTGGCACGCTAAGGCCTTTACCGGAGCTGACACTTCTGGACGCGCCTCTCACTGCCACCGATGAAGCTTCTGAGGCGGAAGACGGTGGTGCTGATGCTATGTGGAAGATCCGAGAACCGAATTTCGGGTTGGCGAGCTCACGATCTAGCAATAAGGTGTGTTCTGGAAGCAAACGGAGGAGATCGGAGGAGTTTGTCAAGGTTCCGGCGGCGATTAATCTTGATTTACGATTGACGCCGATTTTTCAACAGAAGGCGGTGGAGGAACGCCGGCATGGTTCGCCGTCGATGACGTCGGAGGAATCGGTGACGACGACGGCGTGTTTGGAGACTGGGATTGGAGATCGGTGGAGTCACGGTGGTGATCGGAAAGTTCTCAACCTTTTCATATGA 702 0.5214 MSCNGCRVLRKGCSESCILRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPLPELTLLDAPLTATDEASEAEDGGADAMWKIREPNFGLASSRSSNKVCSGSKRRRSEEFVKVPAAINLDLRLTPIFQQKAVEERRHGSPSMTSEESVTTTACLETGIGDRWSHGGDRKVLNLFI* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3430 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 233 - -
Mtr4g3430 233 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Mtr4g3430 233 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Mtr4g3430 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3430 Mtr-Chr4 47802594 47803850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3430 1 232 AS2 family AT3G49940 57.540 2.35e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr4g3430 LOB 8.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3430 - - gmx:100816189 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0579 5 5594773 5596115 Mtr4g3430 4 47802594 47803850 ECH
Mtr4g3430 4 47802594 47803850 Mtr4g3430 4 47802594 47803850 ECH
Mtr4g3430 4 47802594 47803850 Mtr5g0579 5 5594773 5596115 PCT