Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3423 ATGCGCACGAATCCGAAGCAAGCACCACAGCTGCGTTTGTTACTAGTGTGCACCTTGATAAGCTTACGTGCGCCGGTAGCGCAACCTCCTAACGTACGCATACCCACCCAATCCAACGAATCTAATACCACTACCACTATCATCGTTTCCCAGATCTCATCAACAATGTCCAAAGCTCGCGTCTACACCGATGTCAATGTTATTCGCCCCAAAGAGTATTGGGACTATGAATCTCTCACTGTTCAATGGGGGGATCAAGATGATTATGAGGTTGTACGAAAAGTAGGAAGGGGGAAATATAGTGAGGTGTTTGAAGGCATAAATGTTAACAGCAGTGAGCGCTGTGTTATCAAGATTCTCAAGCCCGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGCCCAAACATTGTCAAGCTTCTTGATATTGTCAGAGACCAGCACTCTAAAACTCCAAGTTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCTTGGATTACTGCCATTCTCAAGGCATAATGCATAGAGATGTCAAACCACACAATGTTATGATAGATCATGAATTGCGAAAACTCCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGGAAGGAATATAATGTTCGTGTGGCTTCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTGCAAGACTATGATTACTCATTAGACATGTGGAGCCTTGGCTGTATGTTTGCCGGAATGATATTCCGCAAGGAACCTTTCTTTTACGGTCACGACAACCACGACCAGCTTGTAAAAATAGCCAAGGTGCTTGGAACTGATGAACTAAATGCATATCTGAACAAGTATCATCTGGAGCTAGATCCTCAACTTGATGCACTGGTTGGAAGGCACAGTCGCAAACCTTGGTCTAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCCGAGGCAATCGATTATCTTGATAAGCTCCTTCGATATGACCACCAGGACAGGCTAACAGCAAGAGAAGCAATGGCACATCCGTATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACACAGTAA 1167 0.4233 MRTNPKQAPQLRLLLVCTLISLRAPVAQPPNVRIPTQSNESNTTTTIIVSQISSTMSKARVYTDVNVIRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSSERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDYLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3423 388 Gene3D Phosphorylase Kinase; domain 1 89 165 - -
Mtr4g3423 388 Gene3D Transferase(Phosphotransferase) domain 1 166 374 - -
Mtr4g3423 388 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 9 388 - -
Mtr4g3423 388 PANTHER CASEIN KINASE II SUBUNIT ALPHA 9 388 IPR045216 GO:0004674|GO:0006468
Mtr4g3423 388 ProSiteProfiles Protein kinase domain profile. 89 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3423 388 CDD STKc_CK2_alpha 70 374 IPR045216 GO:0004674|GO:0006468
Mtr4g3423 388 SMART serkin_6 89 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3423 388 Pfam Protein kinase domain 89 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3423 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Mtr4g3423 388 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Mtr4g3423 388 SUPERFAMILY Protein kinase-like (PK-like) 58 378 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3423 Mtr-Chr4 47691628 47697259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3423 87 374 Core Cell Cycle Gene Families AT1G76540 29.450 1.25e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Mtr4g3423 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3423 K03097 - gmx:100819679 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3423 4 47691628 47697259 Mtr4g3423 4 47691628 47697259 ECH