Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3412 ATGACCTTCTTTAAGGAGAGCAATGACAATGAGAAAGCCTCAATCAATAAACAAAAAAATCTTGATGATGAATCACATAGTATAGGAGAATGGTTGAGTTTAGGTACCAAAGGAAACATACCTCTAAACCAAGATTCTCAATCATCAAAACCTCTTCACAACAAAAAGACATATTCATGCAAACCTCTTCACAACAAAAAGACATACTCATGCAACTTCTGCATGAGAAAGTTTTACAATTCACAAGCCTTAGGGGGTCACCAAAATGCACACAAAAGGGAAAGAGAAGCAGCTAGAAATTACCAATTATCTCAAAACTCTTTGGCATCTCGATCACTAGGAATCCAACCTCATTCTCTTGTGCACAAGCCAATCAGAGAAAGAGCTATGGTGGAAGCTCGATTAAATAATGATGCCGATTCTTTTATTGGAACGACATTGGCACCCCTTGGTCTTGAACATGCTGGGGATTTCGTATGGTATGGAAGCTTTCGAATGCAAGAATCAGATACACATGAGCTTGACTTAGATCTTCGGCTTTGA 543 0.3867 MTFFKESNDNEKASINKQKNLDDESHSIGEWLSLGTKGNIPLNQDSQSSKPLHNKKTYSCKPLHNKKTYSCNFCMRKFYNSQALGGHQNAHKREREAARNYQLSQNSLASRSLGIQPHSLVHKPIRERAMVEARLNNDADSFIGTTLAPLGLEHAGDFVWYGSFRMQESDTHELDLDLRL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3412 180 SUPERFAMILY beta-beta-alpha zinc fingers 65 96 IPR036236 -
Mtr4g3412 180 Gene3D Classic Zinc Finger 41 118 - -
Mtr4g3412 180 MobiDBLite consensus disorder prediction 1 22 - -
Mtr4g3412 180 PANTHER ZINC FINGER PROTEIN 4-LIKE 8 180 - -
Mtr4g3412 180 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Mtr4g3412 180 PANTHER ZINC FINGER PROTEIN 4-LIKE 8 180 - -
Mtr4g3412 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3412 Mtr-Chr4 47594647 47595189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3412 32 165 C2H2 Transcription Factor Family AT1G24625 37.415 5.41e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3412 - - ccaj:109809498 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3412 4 47594647 47595189 Mtr4g3412 4 47594647 47595189 ECH