Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3399 ATGAAACTCGTCTTCGAATTTCAACTCCCGAAAATGGAAGCAATTTCATACTCAATCCCTTCTACCAAGTTCCATTCACTTCACACCAAAACCACAAGAATTCAATCCTCTAACCTCGCTTTTCCTATTCGCACATCCCCAATTTCTATCAAACCTCTCTATTCTTCCAAATTCCTCATTCTCCATCATCATAAACTTCGTTGTTCCGCAAATCACACCGATCATAACCATAACCATACTCATAATCATAATCATAATTGTAATCATAACCATCATCATCATTCACATGACATCGATGATGTGAATCTCACTGGACCTCAAAAAGCGATTATCAGTTTCGCCAAAGCTACCAAATGGATTGACCTAGCGAATTTCTTGAGAGAGCATTTGTATCTATGTTGCGCATCAACTGCTTTGTTTGTTGCTGCAGCTATTTGTCCTCATACTTTGCCCAAATCACTCATCAAACCTGTCCAAAACTCGTTCATTCTCGTCGCATTTCCGTTGGTTGGGGTTTCGGCATCACTTGATGCTTTAATTGAAATTAGTGGTGGAAAAGTGAACATCCATGTATTAATGGCAATGGCAGCTTTTGCAACTATTTTTATGGGAAATGCTTTGGAAGGAGGGTTACTACTTGCAATGTTTAATCTTGCACATATAGCTGAAGAGTATTTCACAAGCCGTTCAATGGTTGATGTTAAAGAGTTGAAGGAGAACAATCCAGAATTTGCACTTGTTCTTGATACAAAAGATAATAAACTTCCTAATACATTTGATTTGGCATACCAGAGGGTTCCTGTGCATGATATAACTGTGGGATCATATGTCCTTGTTGGTGCCGGAGAGTCTGTGCCTGTAGATTGTGAAGTTTTCCACGGCGGTGCCACAATTACCATTGAGCACTTGACAGGGGAAGTCAAACCTCTGGAGGCCAAAGTTGGAGATAGAGTTCCTGGCGGTGCAAGGAATATAGATGGGAGAATAATTCTGAAGGTAACAAAGACATGGAAGGAATCAACTCTAAGCAAAATTGTGCAGTTGACTGAAGAAGCTCAGTTGAATAGACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAACGTTACAGCAAAGTTGTTGTGGTGTTATCAATTGCTATTGCCGTTCTTGGTCCACTTTTATTTAAGTGGCCATTCTTTAGTACACCAGCTTGCAGAGGTTCTATTTACAGAGCCTTAGGGCTCATGGTTGCAGCATCACCATGTGCATTGGCTGTGGCTCCATTGGCATATGCCACAGCAATCAGCTCCTGTGCAAAAAAGGGCATATTACTCAAAGGTGGACATGTTCTGGATGCACTAGCTTCGTGTCATACCATTGCATTTGATAAAACAGGGACATTGACTACTGGTGGACTTGTATTCAAGGCAATTGAGCCTGTTTACGGTCATCACATTAGAAACAAGGAATCAAACATATCTTCCTGCTGCGTTCCCACTTGTGAAAAGGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGCACTACCCACCCCATTGGAAGGGCTGTGGTTGAACATAGTGAAGGAAAAAACCTCCCTTCTGTTTCTGTTGAAAATTTTGAGTACTTTCCTGGTAGAGGCCTTACTGCTACTGTTAACAGCATTGAGTCAGGAGCTGGAGGTGCTAACCTATTAAAAGCATCACTTGGGTCTATAGATTTCATCACTTCATTTTGTCAATCTGAAGATGAATCAAAAAAGGTCAAGGAAGCTATTAATGCATCTTCTTATGGAAGTGAATTTGTTCATGCTGCCCTTATAATTAATAAAAAGGTCACGTTGATTCACCTGGAGGATAGGCCTCGTCCAGGGGTTTTTGATGTTATTCAAGAATTGCAAGATGAAGCAAAGTTCCGTGTGATGATGTTAACTGGTGATCATGAATATAGTGCAAGGAGAGTTGCAAGTGCTGTGGGTATCAAAGAGTTTCATTGCAACCTGAAGCCTGAAGATAAGTTGCGTCATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTTGGTGAAGGTATTAATGATGCTCCAGCACTTGCTGCTGCAACTGTTGGGATTGTGCTTGCTCATCGTGCTAGTGCAACTGCTATAGCTGTTGCAGATGTGCTGTTGCTTCGTGAAAATATTTCTGCAGTGCCATTCTGTATTGCCAAATCTCGGCAGACAACTTCACTGATTAAGCAAAATGTGGCTCTGGCATTGTCTAGCATATTCTTGGCTTCCCTTCCATCAGTTTTGGGATTTCTTCCATTGTGGATAACGGTTCTCTTACATGAAGGCGGAACCTTGCTTGTTTGTCTCAACTCCATACGTGGTTTAAATGAACCATCCTGGTCCTGGAAGCATGATATATTACAGTTGATTGGCGAGGTTAAATCTAGACTCCCCTCTCTTCGGAAAAACATAACAGGCTCAAGCAGCATTACAACCGCAAATTTGTGA 2490 0.4153 MKLVFEFQLPKMEAISYSIPSTKFHSLHTKTTRIQSSNLAFPIRTSPISIKPLYSSKFLILHHHKLRCSANHTDHNHNHTHNHNHNCNHNHHHHSHDIDDVNLTGPQKAIISFAKATKWIDLANFLREHLYLCCASTALFVAAAICPHTLPKSLIKPVQNSFILVAFPLVGVSASLDALIEISGGKVNIHVLMAMAAFATIFMGNALEGGLLLAMFNLAHIAEEYFTSRSMVDVKELKENNPEFALVLDTKDNKLPNTFDLAYQRVPVHDITVGSYVLVGAGESVPVDCEVFHGGATITIEHLTGEVKPLEAKVGDRVPGGARNIDGRIILKVTKTWKESTLSKIVQLTEEAQLNRPKLQRWLDEFGERYSKVVVVLSIAIAVLGPLLFKWPFFSTPACRGSIYRALGLMVAASPCALAVAPLAYATAISSCAKKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLVFKAIEPVYGHHIRNKESNISSCCVPTCEKEALAVAAAMEKGTTHPIGRAVVEHSEGKNLPSVSVENFEYFPGRGLTATVNSIESGAGGANLLKASLGSIDFITSFCQSEDESKKVKEAINASSYGSEFVHAALIINKKVTLIHLEDRPRPGVFDVIQELQDEAKFRVMMLTGDHEYSARRVASAVGIKEFHCNLKPEDKLRHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALSSIFLASLPSVLGFLPLWITVLLHEGGTLLVCLNSIRGLNEPSWSWKHDILQLIGEVKSRLPSLRKNITGSSSITTANL* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3399 829 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 590 765 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr4g3399 829 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 217 477 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr4g3399 829 Gene3D - 448 736 IPR023214 -
Mtr4g3399 829 SUPERFAMILY Calcium ATPase, transmembrane domain M 191 770 IPR023298 -
Mtr4g3399 829 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 189 787 IPR027256 GO:0006812|GO:0016021|GO:0019829
Mtr4g3399 829 Pfam E1-E2 ATPase 262 435 - -
Mtr4g3399 829 Gene3D - 227 353 - -
Mtr4g3399 829 SFLD Haloacid Dehalogenase 437 738 - -
Mtr4g3399 829 PRINTS P-type cation-transporting ATPase superfamily signature 455 469 - -
Mtr4g3399 829 PRINTS P-type cation-transporting ATPase superfamily signature 608 619 - -
Mtr4g3399 829 PRINTS P-type cation-transporting ATPase superfamily signature 631 641 - -
Mtr4g3399 829 PRINTS P-type cation-transporting ATPase superfamily signature 685 704 - -
Mtr4g3399 829 PRINTS P-type cation-transporting ATPase superfamily signature 709 721 - -
Mtr4g3399 829 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 45 815 - -
Mtr4g3399 829 ProSitePatterns E1-E2 ATPases phosphorylation site. 457 463 IPR018303 -
Mtr4g3399 829 SUPERFAMILY Calcium ATPase, transduction domain A 263 348 IPR008250 -
Mtr4g3399 829 SFLD p-type atpase 437 738 IPR044492 -
Mtr4g3399 829 Pfam haloacid dehalogenase-like hydrolase 453 698 - -
Mtr4g3399 829 Gene3D - 466 616 IPR023299 GO:0000166
Mtr4g3399 829 SUPERFAMILY HAD-like 453 785 IPR036412 -
Mtr4g3399 829 CDD P-type_ATPase_HM 132 787 - -
Mtr4g3399 829 MobiDBLite consensus disorder prediction 72 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3399 Mtr-Chr4 47396841 47406244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3399 106 813 Primary Pumps ATPases AT4G37270 75.847 0.0 1096
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3399 K01534 - gmx:100776309 1330.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3399 4 47396841 47406244 Mtr4g3399 4 47396841 47406244 ECH