Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3398 ATGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAAGACGAATCCTTAACAAAACTCGTTGATCGTTACGGTCCTCGTAACTGGTCACTCATCAGCCGTGCTATTCCTGGTCGGAGTGGTAAATCTTGCAGGCTGAGATGGTGTAATCAGCTTTCTCCACAAGTTGAGCATCGTGCTTTTTCTCCTGAAGAAGATAACATCATTATCAGAGCCCATGCTCAGTTCGGTAACAAATGGGCTACTATTGCCCGTTTGTTATCGGGCCGAACCGATAACGCTATCAAAAACCACTGGAACTCTACGCTGAAACGGAAGTGCTCGTCTTTCATCGGTTCCGATGATCGCGATTTCAATCCTCAGCCGCTTAAACGCTCTGCTTCCGTCGGTGCTCCGGGGAGTCCTTCTGGTTCTGATTTAAGTGATTCTGGTGTTCAACAAACTGTTTTTCGTCCTGTTCCGATTCGTTTGCCTGTGGAAACTACATCGGAGCCGGAGCCAGTAACGGTACCGGAGGCGGTTGAGGAGGATGACGGTCCTTTAACTTCGCTGTCGCTTTCTCTACCAGGTGTGGATGCTGCTGCGGCGGTGCTGGTTAGTCCTGCTCCGATAACCGCTGTAACTGCCGTAACGGTTTCAGAAGAAGCTGGAATTGGAGCGTTAAATTTGAGTGGTGAATTTATGGCGGTTATGCAAGAGATGATAAAGAATGAAGTGAGGAGTTATATGGAAGAGAGAAATGGAATGTGTTTTCAAGGAGTTGATAGGCTTAGAAATGTTTCTGCTAAGCCAATTGGGATTAACAGGGTTGATGGGTGA 816 0.4779 MDRIKGPWSPEEDESLTKLVDRYGPRNWSLISRAIPGRSGKSCRLRWCNQLSPQVEHRAFSPEEDNIIIRAHAQFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSFIGSDDRDFNPQPLKRSASVGAPGSPSGSDLSDSGVQQTVFRPVPIRLPVETTSEPEPVTVPEAVEEDDGPLTSLSLSLPGVDAAAAVLVSPAPITAVTAVTVSEEAGIGALNLSGEFMAVMQEMIKNEVRSYMEERNGMCFQGVDRLRNVSAKPIGINRVDG* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3398 271 Pfam Myb-like DNA-binding domain 8 65 - -
Mtr4g3398 271 SMART sant 56 104 IPR001005 -
Mtr4g3398 271 SMART sant 4 53 IPR001005 -
Mtr4g3398 271 Gene3D - 4 56 - -
Mtr4g3398 271 PANTHER MYB PROTEIN-RELATED 2 244 - -
Mtr4g3398 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Mtr4g3398 271 CDD SANT 7 49 IPR001005 -
Mtr4g3398 271 PANTHER MYB TRANSCRIPTION FACTOR 2 244 - -
Mtr4g3398 271 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Mtr4g3398 271 CDD SANT 59 102 IPR001005 -
Mtr4g3398 271 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Mtr4g3398 271 MobiDBLite consensus disorder prediction 130 144 - -
Mtr4g3398 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Mtr4g3398 271 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Mtr4g3398 271 MobiDBLite consensus disorder prediction 110 144 - -
Mtr4g3398 271 Gene3D - 58 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3398 Mtr-Chr4 47393302 47394505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3398 2 244 MYB Transcription Factor Family AT5G67300 53.147 8.08e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g3398 Myb_DNA-bind_6 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3398 K09422 - gmx:100806145 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0609 5 5930846 5932411 Mtr4g3398 4 47393302 47394505 ECH
Mtr4g3398 4 47393302 47394505 Mtr4g3398 4 47393302 47394505 ECH
Mtr4g3398 4 47393302 47394505 Mtr5g0609 5 5930846 5932411 PCT