Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3394 ATGTCTCAACCTCAATCTCCTTCCTTTCTCTGTGAAGAACCAAACACCTTCGAAGATGAATCCCTCACCGATTCAGAAACCATTACCAACGACCCATCTGCTACAAAGCTTCAATCTTTATCGATTTTGTTCAACAATGATATGTTTTGGGAAGACGATGAAGTTCTTTCTTTAATCATGAAAGAGAAAGAAACCCATTTGATTAATGATGATTTTGTTATTGATGGATCTTTGAATGAGTCTCGTGTTGAAGGTGTCAATTGGGTTTCTAGAGTTTGTGCTCATTATGGGTTTTCTACTTTGACCACTGTTCTTGCTGTCAACTACTTTGATAGATTCGTTACTAGTTTGAAGTTTCAAAAGGATAAGCCTTGGATGACTCAGCTCACTGCTGTTGCTTGTTTGTCTCTTGCTGCTAAAATGGAAGAAACCCATGTGCCACTTCTTTTGGATTTTCAAGTTGAGGAATCTAGATTTGTGTTTGAAGCTAAAACTATACAAAGAATGGAGCTTTTGGTGTTATCTACATTGAAATGGAGGATGCTTCCGGTGACACCAATTTCATTCTTTGAACACATTGTTAGAAGACTTGGTTTGAAGAGCCGTTTGCATTGGGAGTTTATGTGGCGTTGTGAGAAGGTTCTTCTTCATGTCATTGTTGATTCAAGGGTTATGATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACAATGATCCATGTAATTAAAGAGATTGAACCATTTAATGCAACCGAGTACATTGAACAACTCTTGGGTTTACTAAAGATTAGTGAGGAACAAGTGAATCAGTGCTACAAACTTATGCTGAAGTTATTAGTTTGCGATGATGGCATTTACAGTCTTCACCAAAAACGTAAGCGTGTATCTGAACCAAGTAGTCCGGGTGGTGTCATTGACGCATCTTTCAGTTGTGATAGCTCAAATGATTCATGGACTGCGGCATCGTCGGTTTCGCTCTCACTGCAGCCGATGTTCAAGAGGAGCAAAGCTCAAGACCAGCAGATGCGATTGCCTTCGGTTAATCGTGTGTCTATTGATGTTCTTCATAGCCCTCGTTAA 1080 0.3963 MSQPQSPSFLCEEPNTFEDESLTDSETITNDPSATKLQSLSILFNNDMFWEDDEVLSLIMKEKETHLINDDFVIDGSLNESRVEGVNWVSRVCAHYGFSTLTTVLAVNYFDRFVTSLKFQKDKPWMTQLTAVACLSLAAKMEETHVPLLLDFQVEESRFVFEAKTIQRMELLVLSTLKWRMLPVTPISFFEHIVRRLGLKSRLHWEFMWRCEKVLLHVIVDSRVMMSYLPSTLAAATMIHVIKEIEPFNATEYIEQLLGLLKISEEQVNQCYKLMLKLLVCDDGIYSLHQKRKRVSEPSSPGGVIDASFSCDSSNDSWTAASSVSLSLQPMFKRSKAQDQQMRLPSVNRVSIDVLHSPR* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3394 359 PANTHER CYCLIN-D3-2 5 343 - -
Mtr4g3394 359 SMART Cyclin_C_2 184 313 IPR004367 -
Mtr4g3394 359 MobiDBLite consensus disorder prediction 1 30 - -
Mtr4g3394 359 Gene3D - 183 273 - -
Mtr4g3394 359 SUPERFAMILY Cyclin-like 49 181 IPR036915 -
Mtr4g3394 359 SUPERFAMILY Cyclin-like 185 287 IPR036915 -
Mtr4g3394 359 Gene3D - 78 182 - -
Mtr4g3394 359 Pfam Cyclin, N-terminal domain 60 181 IPR006671 -
Mtr4g3394 359 Pfam Cyclin, C-terminal domain 184 280 IPR004367 -
Mtr4g3394 359 SMART cyclin_7 87 175 IPR013763 -
Mtr4g3394 359 CDD CYCLIN 81 174 IPR013763 -
Mtr4g3394 359 PANTHER CYCLINS 5 343 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3394 Mtr-Chr4 47285438 47287473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3394 30 349 Core Cell Cycle Gene Families AT5G67260 52.599 1.18e-107 319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3672 3 50603150 50604925 Mtr4g3394 4 47285438 47287473 ECH
Mtr4g3394 4 47285438 47287473 Mtr4g3394 4 47285438 47287473 ECH