Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3391 TCTTCTCAATACATTGATATGAATCAAAACGATCTTCAGCCTCTACCTTTGTTAAGTAGCTTCCTAGGTTCAACTTCACAAGAACCTTTACCACAAAAGGAAAGTCATAAGACATGTTTTAATCAAGCTGAGGATGTCACAGTGGCCTTACAAATAGGCCTTCCTAACAATTCAAGTGAATCACAAAATGAAAATGGATTTCTGAATGTCCCAAATCATGTTCCTAACAATTACTGGATACCAACTCAAGAACAGATTCTCATTGGATTCAGTCATTTCTCATGCCCAGTCTGCCTCAAAACTTTCAATCGTTACAACAACCTTCAGATGCATATGTGGGGGCATGGTTCGCAGTATCGAAGAGGACCAGACTCGCTGAAAAGAACCCATCCACGACCATTGTTAGACCTACCATGCTATTGTTGTTCAAAGGGATGTAAGAACAACATTGAGCATCCAAGAGCTAAGCCATTGAAGGATTTCAGAACACTGCAGACACACTACAAGAGGAAGCATGGTTCAAAAACATTCACTTGTCGAAAATGTGGGAAGCCATTGGCAGTGAAAGGTGATTGGAGAACTCATGAGAAAAACTGTGGCAAGCGTTGGCTTTGTATCTGTGGATCAGATTTCAAACACAAGAGGTCACTTAAGGATCATATCAAAGCATTTGGATTTGGTCATAGCCCTTTTTCTTCTTCCTCTGGTGGTATTTAA 717 0.4031 SSQYIDMNQNDLQPLPLLSSFLGSTSQEPLPQKESHKTCFNQAEDVTVALQIGLPNNSSESQNENGFLNVPNHVPNNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDLPCYCCSKGCKNNIEHPRAKPLKDFRTLQTHYKRKHGSKTFTCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSSGGI* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3391 238 Gene3D Classic Zinc Finger 92 115 - -
Mtr4g3391 238 Gene3D Classic Zinc Finger 155 227 - -
Mtr4g3391 238 SMART c2h2final6 177 197 IPR013087 -
Mtr4g3391 238 SMART c2h2final6 140 172 IPR013087 -
Mtr4g3391 238 SMART c2h2final6 93 115 IPR013087 -
Mtr4g3391 238 PANTHER ZINC FINGER PROTEIN WIP2 9 237 IPR043584 GO:0003700|GO:0010468
Mtr4g3391 238 PANTHER PROTEIN TRANSPARENT TESTA 1-LIKE 9 237 - -
Mtr4g3391 238 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Mtr4g3391 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Mtr4g3391 238 Pfam Zinc finger, C2H2 type 93 112 IPR013087 -
Mtr4g3391 238 SUPERFAMILY beta-beta-alpha zinc fingers 88 115 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3391 Mtr-Chr4 47248264 47249600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3391 46 233 C2H2 Transcription Factor Family AT1G34790 66.502 6.53e-97 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g3391 zf-C2H2 0.0036 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3391 - - cam:101514022 432.95