Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3378 ATGTGGGATCTTAATGGTTCACCTTTTAAGAGAAAAGAAGATGAAAAATCTGAAGGATGTTCTTCACTCAAGACATCAATAGATGGAGATGAAGATAAAGCAAAAAGGGTTGGTGGATCTGTTTCAAATTCAAGCTCTTCAGCTATAGTAATAGAAGAAGATTCAGAAGAAGACAATAGCAACAAAGACATGATGATGATGATGATGAAGAAAAGAAACAGTAAGATATTTGGTTTCTCAGTATCTCAAGAAGAAGAAAATGAAAATTCCTTAGACAGTGAAAATTTTCCTGTGACAAGACAGTTTTTTCCTATGGATCAAGAGTCTGATGATATGGTTGTAGCATCTTCATGTGGTGGAAATGGAACATCTTCATCTTCTTCTAGTTTTCCTCGTGCTCATTGGGTAGGTGTGAAATTTTGTCAATCAGAAACACTTGGAAGTGGAAAATCAGTAGAACTTTCTTCTTCATCTTCTTCACAACCTATGAAGAAAAGTAGAAGAGGACCAAGGTCAAGAAGTTCACAATATAGAGGAGTTACTTTTTACAGAAGAACAGGTCGATGGGAATCACATATATGGGATTGTGGAAAACAAGTGTATCTTGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCTATAAAGTTTAGAGGAGTTGAGGCTGACATAAATTTTAATATTGAAGATTATGAAGAAGACTTGAAGCAGATGACTAATTTGACAAAAGAAGAGTTTGTACATGTACTTCGTCGACAAAGCACTGGTTTTCCAAGAGGAAGCTCTAAATATAGAGGTGTTACATTGCACAAATGTGGAAGATGGGAGGCAAGAATGGGACAATTTTTAGGAAAAAAGTACGTTTATCTGGGCTTGTTTGACACCGAGGTTGAAGCTGCAAGGGCTTATGACAAAGCAGCAATAAAATGCAATGGTAAAGAGGCCGTCACCAATTTTGATCCAAGCATATATGATAGCGAGCTTAATAATTCTGATCCAGCAAGTAATGCTGGTGATCACAATTTGGATTTAAGTTTGGGAAATTCAAGTGCAAAGCCTATCAATAATACTCAAGCAAATCATGCATCTGATCAATCTAATTTGCAGCATGGGGGAAACAAGCCTAAGCTTGTGAATATACTCCCCAAACCATATAATAGACCAAACAATATTGAAGCATATGGAAGGGATTTGCATGGAGAGAGTGAAGCATTGAGGATGCTAAGTCAAACTCACCTTCATTCTTCATCATCTAATGAAATGCATAGATATGCTCCTTTTAGAGATCAGTCACAAATGCTTCAAAGTTTTGCACATACTCATCCCCCAAATATTCATTTTCCCAGCAGCAGCTATGGAAGCCGAGTTGGAAGTGATCTTTCGTTATCAACGAGCAATCATCATCAACAACAACAATGGCAATCAGGGCCACATTATTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCACCTCAAATTAGACCACCCTCTTCTTCTCAAGCTTGGCAGCACATAAATGGCTTCCACAATCTCATGAGACCCTCTTGA 1566 0.3825 MWDLNGSPFKRKEDEKSEGCSSLKTSIDGDEDKAKRVGGSVSNSSSSAIVIEEDSEEDNSNKDMMMMMMKKRNSKIFGFSVSQEEENENSLDSENFPVTRQFFPMDQESDDMVVASSCGGNGTSSSSSSFPRAHWVGVKFCQSETLGSGKSVELSSSSSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDSELNNSDPASNAGDHNLDLSLGNSSAKPINNTQANHASDQSNLQHGGNKPKLVNILPKPYNRPNNIEAYGRDLHGESEALRMLSQTHLHSSSSNEMHRYAPFRDQSQMLQSFAHTHPPNIHFPSSSYGSRVGSDLSLSTSNHHQQQQWQSGPHYLATAAAASSGFPPQIRPPSSSQAWQHINGFHNLMRPS* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3378 521 MobiDBLite consensus disorder prediction 332 389 - -
Mtr4g3378 521 SUPERFAMILY DNA-binding domain 175 233 IPR016177 GO:0003677
Mtr4g3378 521 Gene3D AP2/ERF domain 175 234 IPR036955 GO:0003700|GO:0006355
Mtr4g3378 521 Gene3D AP2/ERF domain 267 326 IPR036955 GO:0003700|GO:0006355
Mtr4g3378 521 MobiDBLite consensus disorder prediction 1 37 - -
Mtr4g3378 521 CDD AP2 176 233 IPR001471 GO:0003700|GO:0006355
Mtr4g3378 521 Pfam AP2 domain 267 316 IPR001471 GO:0003700|GO:0006355
Mtr4g3378 521 Pfam AP2 domain 176 224 IPR001471 GO:0003700|GO:0006355
Mtr4g3378 521 CDD AP2 267 327 IPR001471 GO:0003700|GO:0006355
Mtr4g3378 521 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 519 - -
Mtr4g3378 521 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 519 - -
Mtr4g3378 521 SMART rav1_2 176 238 IPR001471 GO:0003700|GO:0006355
Mtr4g3378 521 SMART rav1_2 268 331 IPR001471 GO:0003700|GO:0006355
Mtr4g3378 521 MobiDBLite consensus disorder prediction 449 480 - -
Mtr4g3378 521 ProSiteProfiles AP2/ERF domain profile. 268 325 IPR001471 GO:0003700|GO:0006355
Mtr4g3378 521 MobiDBLite consensus disorder prediction 332 378 - -
Mtr4g3378 521 MobiDBLite consensus disorder prediction 1 63 - -
Mtr4g3378 521 MobiDBLite consensus disorder prediction 149 177 - -
Mtr4g3378 521 PRINTS Ethylene responsive element binding protein signature 269 280 IPR001471 GO:0003700|GO:0006355
Mtr4g3378 521 PRINTS Ethylene responsive element binding protein signature 307 327 IPR001471 GO:0003700|GO:0006355
Mtr4g3378 521 ProSiteProfiles AP2/ERF domain profile. 176 232 IPR001471 GO:0003700|GO:0006355
Mtr4g3378 521 SUPERFAMILY DNA-binding domain 267 327 IPR016177 GO:0003677
Mtr4g3378 521 MobiDBLite consensus disorder prediction 149 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3378 Mtr-Chr4 47101905 47105538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3378 1 521 AP2-EREBP Transcription Factor Family AT4G36920 52.416 5.36e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mtr4g3378 AP2 8.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3378 K09284 - gmx:100792442 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3378 4 47101905 47105538 Mtr4g3378 4 47101905 47105538 ECH
Mtr5g0625 5 6070828 6074493 Mtr4g3378 4 47101905 47105538 PCT