Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3362 ATGGCATCATCACAGGTTGAAATAGCTTCCTTTGATTCAACACCAACATGGGTTTCAAGTGTTGCTAAAAAAAACAAACCTGGAAGCCTAAATTTCAACAAAAAATTTCCTAATGTATTTGGAGACAAAAATGATTCTTCTTTGTCTGCATTGGTGAGTCCAAGGCACTCAAAGATCATTGATCGATGGGCCGCAAGACAAGCTCAAGAAGTGGCAAAAAATCTTGAAAAAAATAATGAGAATGTTGTTGTTAAGAGGTTTGATAATTTTCCTTCAAGGTCATCAAGTTTCAATTCTAGGAGAGGTTCTGTTTCACCTCCTCGTTCTGACGGATCATCTGAAAGCGAAAAAACATTCAACATTGGTGCTTCTTCTCTTGTTCAAATGTGGGAAAAAAGGCTTAACAACCAATCCAATTGCACAAAACAAAATGCACCATCATATGTAAGAACTAATTCTGATGCAAGTAGCAATGAGATTAATGCTAGTTCTGTGGAAGAACCAGAAAAAGGTGAATCCTCTGATGAAGCATATTCATATGGAGAATATGATAAACCAAGACTAAGTATTGATGAAACTTGTTCACCAAAAGTGCATTATAATTTAGATGCTTTTAAAAGCGAGAAAATCAAGGTTGCTGATATTATAAAGAAACTTTCTGTTACAAATGATGAGAATGATCATGAACAAAGTAATAGTGCGACGGGTTCTCCATGTATTTCCACACCAAAACAATTAGCAGAACATAGAGGTTTTGGTCAGGTCACAAGCCACCCACGTATTAGAGGGCGCCAAGCATTTAATGATTTGATTATGCAGTTTGAGTGTGATCGACATGGCGAGCTCAACAATCTTGCAGAGCGAGGCGCGGTTTCTAAGTTCACACAAAGAGGTCGCATTCAGTCATTGCTTCGACTTCGATTATTACAACGTGGAGTAGCAGCTTTTGATCCATCCAGCTTGAAATTAACAACACTGGAAGGGAACAAAAAACAATCAACAACACCCGAAGGGAACAAAAAACAATCAACAACACCGGAGGGGAACAAAAAACAACAAGGATCAGTAATTATGCAACTAAGGGAAAGATTTAACACAAAAGATGAACAGAAAACTTCATCCCTAATAGAAGTGTCCGAGCCGAGAAGTATAGACAGGGAGACCATAAACAATACCGCACAATTGAATAAATTTCACACTACTAATCAACTTAACAAAGAAATTGTTTGCAGCAAGATAGTCACTAACATCCACACTAAGAAAAATAAACTGAATGTAGTTTCTCAAACTAGGGCAGATATCAAAGAAGAAGCCCGTATAATTTATGGTTTTGACCCTCAAAATCACGGTCCAAAAGAAATTCCTGTGGAATTATCATCCAAGGTTGACTCAAACGCAAATGATATAACTGATAAAGTCGAGGCAAGAGACCAACAATTATATGATACTATTGAAACCAATTATTACAATGAAATGTTAGAAGAGAAAGAGTGCAGTGACTATAATTATGATGAAATTAGCGCAAGTTATGACTGGGCGAGTCCTATTTCCCGGCCTAGAAGCTACTGGGAAGAGCTCAGACAAGAATGGTATAAGGAAATGCTTGACTTTGCTTCTGACAACGATGAGAGACGTAAACTCCTTGAAAGAAAAACAGTTTCAACTGTCCTTTCTAGTGACTTTCGAGAAAAGATGGATAAATTGATGGAGTCTCATGTGGGAACACAAACACACTTGGTCAATAATCAATGCGACGAGGAAGATGAAGAAGGAAATACAAAACAATTGATGGCATTTTATCACGATCGCCTTCGTGACACAAGGGAAAAAGAGACGAGGAGTAATGAGGAAGAAATGGATGAAGAGAAGGTAGAGGAGCATGAACATGAAAGCATCAGTAGTGGCTCAGATCATGAACTTGGTGATTGTCAATCCTCATCATCAGCAGACACACCATCCTCAGCAACATGGAGTTATAGAGACACTGATATTGGAGATGATTCTGATAGAGTTGCATTTGTATCCTCACCATTGCCTTCTCAATCTCAATCTTGCTATGAAGATAGTAGAGAAAACTCTCCATCCGCAAATCAACGTTCAATTGAAATGGAAATTATATACGGTTTGCGAGGGCAAATGGAACAACTTTTTCAAGAGATTTCTGAGCTAAGGAAAACAATAAAAAACTGTGCAGACACACAAATGCAGATGCAATTACAACAATCCCAAAACCAAGAGGTTCACAAATTTAAAGACAAGAAATCCAGTAACAAGACATCAAAGAAAGGCATGTGCTGCATTTGCAATGAAAATAAAGTAAACTCAGTTTTATACAGATGTGGGCACATGTGTGCATGTCTCAACTGTGCCAATGAGTTGCAATGGAAAAGTGGAAAATGTCCAATATGCCAAGTTGCAATAATAGATGTTGTCAAAGTACATACCAACATATAA 2454 0.3769 MASSQVEIASFDSTPTWVSSVAKKNKPGSLNFNKKFPNVFGDKNDSSLSALVSPRHSKIIDRWAARQAQEVAKNLEKNNENVVVKRFDNFPSRSSSFNSRRGSVSPPRSDGSSESEKTFNIGASSLVQMWEKRLNNQSNCTKQNAPSYVRTNSDASSNEINASSVEEPEKGESSDEAYSYGEYDKPRLSIDETCSPKVHYNLDAFKSEKIKVADIIKKLSVTNDENDHEQSNSATGSPCISTPKQLAEHRGFGQVTSHPRIRGRQAFNDLIMQFECDRHGELNNLAERGAVSKFTQRGRIQSLLRLRLLQRGVAAFDPSSLKLTTLEGNKKQSTTPEGNKKQSTTPEGNKKQQGSVIMQLRERFNTKDEQKTSSLIEVSEPRSIDRETINNTAQLNKFHTTNQLNKEIVCSKIVTNIHTKKNKLNVVSQTRADIKEEARIIYGFDPQNHGPKEIPVELSSKVDSNANDITDKVEARDQQLYDTIETNYYNEMLEEKECSDYNYDEISASYDWASPISRPRSYWEELRQEWYKEMLDFASDNDERRKLLERKTVSTVLSSDFREKMDKLMESHVGTQTHLVNNQCDEEDEEGNTKQLMAFYHDRLRDTREKETRSNEEEMDEEKVEEHEHESISSGSDHELGDCQSSSSADTPSSATWSYRDTDIGDDSDRVAFVSSPLPSQSQSCYEDSRENSPSANQRSIEMEIIYGLRGQMEQLFQEISELRKTIKNCADTQMQMQLQQSQNQEVHKFKDKKSSNKTSKKGMCCICNENKVNSVLYRCGHMCACLNCANELQWKSGKCPICQVAIIDVVKVHTNI* 818
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3362 817 Coils Coil 65 85 - -
Mtr4g3362 817 MobiDBLite consensus disorder prediction 165 179 - -
Mtr4g3362 817 Pfam Zinc finger, C3HC4 type (RING finger) 762 809 - -
Mtr4g3362 817 MobiDBLite consensus disorder prediction 600 698 - -
Mtr4g3362 817 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 736 815 IPR013083 -
Mtr4g3362 817 Coils Coil 713 733 - -
Mtr4g3362 817 PANTHER BNAC05G24000D PROTEIN 42 816 - -
Mtr4g3362 817 MobiDBLite consensus disorder prediction 637 661 - -
Mtr4g3362 817 MobiDBLite consensus disorder prediction 226 242 - -
Mtr4g3362 817 MobiDBLite consensus disorder prediction 137 164 - -
Mtr4g3362 817 Coils Coil 601 621 - -
Mtr4g3362 817 MobiDBLite consensus disorder prediction 325 355 - -
Mtr4g3362 817 PANTHER BNAC05G24000D PROTEIN 42 816 - -
Mtr4g3362 817 MobiDBLite consensus disorder prediction 137 179 - -
Mtr4g3362 817 MobiDBLite consensus disorder prediction 674 698 - -
Mtr4g3362 817 MobiDBLite consensus disorder prediction 92 117 - -
Mtr4g3362 817 SUPERFAMILY RING/U-box 764 809 - -
Mtr4g3362 817 MobiDBLite consensus disorder prediction 600 617 - -
Mtr4g3362 817 CDD mRING-HC-C3HC5_NEU1 765 803 - -
Mtr4g3362 817 ProSiteProfiles Zinc finger RING-type profile. 765 804 IPR001841 -
Mtr4g3362 817 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr4g3362 Mtr-Chr4 46915005 46918462 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3362 765 816 C3H Transcription Factor Family AT3G06140 36.538 2.03e-06 48.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3362 - - mtr:MTR_4g094795 1564.67