Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3360 ATGAAGATTTCAACACTTCATGTAGTAGTTTTGCTCCTTCTGTGTTTTATTTCAATGCCACTACTAGTCATTGGCCAAGAAAACTTGGACAAAGATACAACTTTGAGAGTGCTTTTGGAAGTGAAGACATTTTTTCTCCAAGACCCGCAAAATGTTTTGAGTGATTGGTCACAAGACAACACAGATTATTGTAGTTGGAAAGGTGTTTCATGTGGTTTGAACCCTTTGGTGGATGACTCTGAGCATGTGGTTGGACTCAACCTTTCCGACTCGTCACTCACCGGGTCAATTTCACCTTCACTCGGTCGTTTGAAAAACTTGCTCCACCTTGATCTCTCCTCCAATTGTCTCACAGGTCCCATTCCAACAAATCTCTCTAACCTTGTCTCATTGGAAACTTTGCTACTGTTTTCTAACCAACTCAGTGGTTCTGTTCCTGTTGAGTTTGGCTCGCTCACGAGTCTCCGAGTTATGCGGCTTGGAGACAATGCATTAACTGGTATGATTCCTGCATCTCTTGGGAAACTGGTTAACTTGGTCAGTCTTGGTTTAGCTTCATGTGAACTCACCGGGTCGATTCCACCAGAACTCAGTCAACTCGGTCTCTTGGAGAATCTTGTTCTGCAAGACAACGGGTTGATGGGTCCAATTCCATCCGAGTTAGGGAACTGCTCAAGCCTCACTGTCTTCACCGCTTCTAACAACAAGCTCAATGGCTCAATTCCAAGTGAACTAGGTCAGCTCCAGAATCTACAGCTTCTCAACCTTGGCAACAATAGTCTAGCAGGAGAGATTCCGAGTCAACTTGGTGATATGAGTGAACTCGTATACCTCAATTTCATGGGAAACCAGCTTGAAGGTGCAATTCCACCATCTCTAGCTCAACTAGGTAATCTTCAAAATCTTGACTTGTCTATGAACAAGCTAAGTGGAGGAATTCCAGAGGAGTTTGGTAACATGGGTCAGCTTGGTTTCATGGTTCTGTCTGGTAACAACCTTAATAGTGTCATACCAAGAACAATATGTTCCAATGCAACAAATTTGGAACATTTAATGCTATCAGAAAGTGGTCTTTTTGGTGAGATTCCAGCTGAATTGAGCCAGTGTCAGTCGTTGAAACAAATCGATTTGTCTAACAATTCACTCAATGGGTCTATACCTCTTGAGCTCTATGGATTGGTGGAGTTAACTGATCTATTGTTAAACAACAATAGTTTGGTTGGTTCCATCTCTCCTTTTATAGGGAACTTCAGCAGCTTGCAGACACTTTCTTTGTATCACAACAAATTGCAGGGTGATCTTCCAAGAGAGATTGGAATGCTTGAAAAGTTGGAAATTTTGTATCTTTATGATAATCAATTATCTGGGGATATACCTATGGAGATTGGTAACTGTTCAAGCTTGCAAATGATTGATTTCTTTGGAAACAGTTTCAAGGGGGAAATTCCCATCACTATTGGAAGGCTAAAAGAGTTGAATTTCCTTCACCTCAGGCAGAATGAGCTTGTGGGTGAGATTCCTGCAACCTTGGGGAACTGTCATAAACTGAATATCTTGGATTTGGCTGATAATCAGCTCTCTGGCGCAATTCCTGCAACCTTGGGATTCCTTGAGTCATTGCAGCAGCTCATGCTCTACAACAACTCTCTTGAAGGTAACCTTCCTCACCAATTGATAAATGTAGCAAACTTGACCAGGGTGAATCTTTCAAAGAATAGATTGAATGGCAGTATAGCTGCTTTGTGTAGCTCTAAATCGTTTCTTACTTTCGATGTTACCGATAATGAGTTTGATGGTGAAATTCCGCCTCAACTAGGAAACTCGCCCACTCTTTATAGGATAAAATTAGGCAACAACAAATTTTCTGGTGAAATTCCGAGGACATTGGGAAAAATCCATGACCTGTCGGTGTTAGTTCTATCAGGAAATTCACTCACCGGACCAATACCAGCCGAGCTGTCTTTGTGCAATAAACTTGCTTACATTGATTTAAACAGTAATCTTCTTTATGGACAAATACCATCATGGCTGGGAAAATTACCTCAGTTAGGAGAGCTTAAGCTCTCCTCCAACAATTTTTCCGGACCTCTTCCATTAGGCCTATTCAAATGTTCCAATTTACTAGTTCTCTCTCTGAATGAAAACTCACTCAATGGAAGCCTCCCAGCTGATATTGGTGATCTTACATATCTTAATGTCCTTCGACTTGACCGTAATAAGTTCTCTGAACCAATCCCTCCTGAGATAGGTAGGTTGAGCAAGCTTTATGAGCTGCAGCTCTCCAGGAATAGCTTTAATGGTGAGATCCCAAGTGAGATTGGAAAACTTCAAAATCTACAAATCATTGTAGACCTCAGTTACAATAATCTCTCAGGTGGCATACCATATTCTCTAGGGACTATGTCAAAATTGGAAACACTTGATCTTTCCCACAATCAACTTACTGGAAAAATCCCTCCACAAGTGGGTGATATGAGCAGCTTGGAAAAGCTTGATCTCTCTTACAACAATCTTCAAGGGAAATTGGACAAGAAGTTTTCCCGGTGGCCAGATGACGCATTTGAAGGAAACCTAAATCTTTGTGGAAGCCCTCTTGACCGCTGCGACAGTGATGATACTTCTGGCGGTAAGCAGTCACGCCTAAGTGAGTCAACAGTGGTGATAATATCTGTCATTTCAACTTCAGCTGCAATTGCACTATTGATACTTTCAGTAAGAATGTTCTGCAAAAACAAGCAAGAATTCTCAAGGGAAGACAGCAAAGTGACTTCTTATGTCTACTCTTCCTCTTCATCACAAGCACAGAGACGACCGTTGTTCCAGCTAAGAGCTGCTGGAAAAAGGGATTTCAATTGGGAAGATATCATGGATGCAACGAACAATCTAAATGATGACTTCATGATTGGTTCGGGAGGTTCAGGGAAAGTCTACAAAGCTGAATTGGCCAGTGGAGAGACAGTTGCTGTCAAGAAGATTTCATCAAAAGATGACTTTCTGTTAAACAAAAGTTTCTTAAGAGAAGTTAATACACTGGGGAGAATAAAGCATAGACATTTGGTGAAGCTAATAGGATTCTGTAGCAGTAGAAACAAAGGAGCAAGTTCGAATTTATTGATCTATGAGTACATGGAGAATGGAAGTTTATGGGACTGGCTTCACAGGAAACCAAACATCGCGAGCAAAGTAAAGAAGAACCTTGATTGGGAGACAAGATTCAAAATTGCTGTGGGTTTAGCTCAAGGAGTGGAGTACCTACATCACGATTGTGCACCAAAGATCATTCACAGAGACATCAAATCCAGCAACATATTGCTAGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGACTGGCAAAAGCACTCATTGAAAGTTATGACTCAAATACTGAGTCAAATTCTTGTTTTGCAGGGTCTTATGGCTACATGGCTCCAGAGCATGCATTCTCCCTGCGGTCAACAGAAAAAAGTGATGTTTTCAGCATGGGAATAGTTCTTATGGAACTTGTTAGTGGTAAAATGCCAACAAGTGACTTTTTTGGAGCTGACATGGATATGGTGAGATGGATGGAGATGCATATTAATATGCATGGCTCTACCCGTGAGAAACTGATAGATCCTGAACTGAAACCTCTTCTACCCAGTGAAGAGTTTGCTGCATTCCAAGTGCTTGAGATAGCCTTGCAATGCACCAAAGCGACACCACAGGAGAGGCCGTCTTCAAGGAAAATATGTGATCTTCTCCTCCATGTATTCAATAACAGAAGGATGGACTTAGAGAAGATGAAGTTGGATTATCACAAGTAA 3807 0.4142 MKISTLHVVVLLLLCFISMPLLVIGQENLDKDTTLRVLLEVKTFFLQDPQNVLSDWSQDNTDYCSWKGVSCGLNPLVDDSEHVVGLNLSDSSLTGSISPSLGRLKNLLHLDLSSNCLTGPIPTNLSNLVSLETLLLFSNQLSGSVPVEFGSLTSLRVMRLGDNALTGMIPASLGKLVNLVSLGLASCELTGSIPPELSQLGLLENLVLQDNGLMGPIPSELGNCSSLTVFTASNNKLNGSIPSELGQLQNLQLLNLGNNSLAGEIPSQLGDMSELVYLNFMGNQLEGAIPPSLAQLGNLQNLDLSMNKLSGGIPEEFGNMGQLGFMVLSGNNLNSVIPRTICSNATNLEHLMLSESGLFGEIPAELSQCQSLKQIDLSNNSLNGSIPLELYGLVELTDLLLNNNSLVGSISPFIGNFSSLQTLSLYHNKLQGDLPREIGMLEKLEILYLYDNQLSGDIPMEIGNCSSLQMIDFFGNSFKGEIPITIGRLKELNFLHLRQNELVGEIPATLGNCHKLNILDLADNQLSGAIPATLGFLESLQQLMLYNNSLEGNLPHQLINVANLTRVNLSKNRLNGSIAALCSSKSFLTFDVTDNEFDGEIPPQLGNSPTLYRIKLGNNKFSGEIPRTLGKIHDLSVLVLSGNSLTGPIPAELSLCNKLAYIDLNSNLLYGQIPSWLGKLPQLGELKLSSNNFSGPLPLGLFKCSNLLVLSLNENSLNGSLPADIGDLTYLNVLRLDRNKFSEPIPPEIGRLSKLYELQLSRNSFNGEIPSEIGKLQNLQIIVDLSYNNLSGGIPYSLGTMSKLETLDLSHNQLTGKIPPQVGDMSSLEKLDLSYNNLQGKLDKKFSRWPDDAFEGNLNLCGSPLDRCDSDDTSGGKQSRLSESTVVIISVISTSAAIALLILSVRMFCKNKQEFSREDSKVTSYVYSSSSSQAQRRPLFQLRAAGKRDFNWEDIMDATNNLNDDFMIGSGGSGKVYKAELASGETVAVKKISSKDDFLLNKSFLREVNTLGRIKHRHLVKLIGFCSSRNKGASSNLLIYEYMENGSLWDWLHRKPNIASKVKKNLDWETRFKIAVGLAQGVEYLHHDCAPKIIHRDIKSSNILLDSKMEAHLGDFGLAKALIESYDSNTESNSCFAGSYGYMAPEHAFSLRSTEKSDVFSMGIVLMELVSGKMPTSDFFGADMDMVRWMEMHINMHGSTREKLIDPELKPLLPSEEFAAFQVLEIALQCTKATPQERPSSRKICDLLLHVFNNRRMDLEKMKLDYHK* 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3360 1268 SUPERFAMILY RNI-like 85 407 - -
Mtr4g3360 1268 ProSitePatterns Protein kinases ATP-binding region signature. 968 991 IPR017441 GO:0005524
Mtr4g3360 1268 SUPERFAMILY L domain-like 315 691 - -
Mtr4g3360 1268 SUPERFAMILY L domain-like 607 850 - -
Mtr4g3360 1268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1093 1105 IPR008271 GO:0004672|GO:0006468
Mtr4g3360 1268 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515
Mtr4g3360 1268 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 8 1263 - -
Mtr4g3360 1268 Gene3D Ribonuclease Inhibitor 466 536 IPR032675 -
Mtr4g3360 1268 Gene3D Ribonuclease Inhibitor 199 274 IPR032675 -
Mtr4g3360 1268 ProSiteProfiles Leucine-rich repeat profile. 803 825 IPR001611 GO:0005515
Mtr4g3360 1268 Gene3D Transferase(Phosphotransferase) domain 1 1043 1266 - -
Mtr4g3360 1268 SUPERFAMILY Protein kinase-like (PK-like) 946 1248 IPR011009 -
Mtr4g3360 1268 Gene3D Ribonuclease Inhibitor 278 389 IPR032675 -
Mtr4g3360 1268 Gene3D Phosphorylase Kinase; domain 1 921 1042 - -
Mtr4g3360 1268 PRINTS Leucine-rich repeat signature 804 817 - -
Mtr4g3360 1268 PRINTS Leucine-rich repeat signature 825 838 - -
Mtr4g3360 1268 Pfam Leucine rich repeat N-terminal domain 36 71 IPR013210 -
Mtr4g3360 1268 Pfam Leucine Rich repeats (2 copies) 803 841 IPR025875 -
Mtr4g3360 1268 ProSiteProfiles Protein kinase domain profile. 962 1253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3360 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 8 1263 - -
Mtr4g3360 1268 Pfam Protein kinase domain 967 1245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3360 1268 Gene3D Ribonuclease Inhibitor 539 872 IPR032675 -
Mtr4g3360 1268 SMART LRR_typ_2 801 824 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 128 151 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 489 513 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 752 776 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 537 561 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 825 856 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 320 344 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 176 200 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 441 465 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 152 175 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 393 417 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 248 272 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 104 127 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 296 319 IPR003591 -
Mtr4g3360 1268 SMART LRR_typ_2 680 704 IPR003591 -
Mtr4g3360 1268 Gene3D Ribonuclease Inhibitor 390 465 IPR032675 -
Mtr4g3360 1268 SMART serkin_6 962 1253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3360 1268 Gene3D Ribonuclease Inhibitor 32 196 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3360 Mtr-Chr4 46905346 46909870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3360 6 706 Receptor kinase-like Gene Family AT1G17750 36.209 5.66e-100 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr4g3360 Pkinase 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3360 - - gmx:100801889 2006.49