Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3352 ATGCATTCACATTGTATGTTCTGTTACAACATTTTTAAATTTCTGATTTTTTTATTAATTTGTGTTAACTATTGCAGACAAATAGCAATGAGTTCAGGTTCAGGAGACAAGCAAAACATGCATGAACAAAATGGTTGCTTTGATCCCAACACAAAAGATGAAGGTGTTGAAAACTCTCCCAATGATAACAACACAAACAACAACAATAGCCTTGAAGAGAATTTCAAGCCTTCTGTAGAGGAACTACCTTACCACAATCATCAAAATTCACAACACCTTGATGATGTTTCCACTTATACAAATGGATTCACTCCCTCATCAGTAGACATTGAACAACTACAAAATCTTGGTTTGAACATAGGGAATACCTACAACAACATGGATAACCATTTGGTACAAGAAGTGTATCAGAACTCGACTTGGGACCCTAGTGTTCAGGATATGGATTATGTCAATCACCAAGAACACCGCCAACTATCTGAACAACAATATCAACAATTTATCGAGGCGCAAAACCATAACCAAAGCTACAATCCCTCGACCATTCTAGACCCTCATTACCCTTCACCGGATGTCCTTAACCTTCTCAACTTACCTAGATGCTCTTCATCTTTGCTCACAAATTCATCCACCATTTGCATGACAAACCCAACTCAAAATCCACCCAATTTTCATAATTCAATGACTTTTCTTGGAGACCTTCCAATAGGATCATCAGACAACACAAGCGGATCATCGGTTTTGTATGATCCTCTATATCCTTTGAATCTTCCTCCACAGCCTCCAGCTCTCAGGGAATTGTTTCAATCTCTGCCTCGAGGCTATAGCATGCCAACCAACTCGAGAAATGGTTCTCTTTTCGGTGGAGGTGATGAGATGGAGGGAGATGGGGATATGGGAGTGCTGGAATTCAATAGGGTCACTGCTTCTGTTGGCAAAGGAAGAGGAGGAAAAGCTACCAAACATTTTGCGACTGAGAAACAAAGAAGGGAGCAATTGAATGGAAAGTACAAAATCTTGAGGGATCTCATTCCAAGTCCCACCAAGACTGATAGAGCATCAGTGGTTGGAGATGCTATTGAGTATATAAGAGAGCTGATTAGAACAGTGAATGAACTGAAATTATTGGTGGAGAAGAAAAGACATGGGAGGGAGATGTGTAAGAGACTTAAAACTGAAGATGATGCTGCAGAAAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGAAGTATAAGAACCTCATGGCTGCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTATCGATGATGATGTTACAATCAAACTGTTTCAGAGGAAGAAAGTTAATTGCTTGCTGTTTGTGTCCAAGGTTTTGGATGAACTTCAGTTGGAACTTCACCATGTTGCAGGTGGACATGTTGGTGAATATTGTAGTTTCTTGTTCAATAGCAAGGTGAACGAAGGTTCATCAGTGTATGCAAGTGCTATAGCCAACAGGGTGATTGATGTTATGGACACACAATATGCAGCTGGTCTTCCACATATAAGTAGGCTGTAG 1548 0.4025 MHSHCMFCYNIFKFLIFLLICVNYCRQIAMSSGSGDKQNMHEQNGCFDPNTKDEGVENSPNDNNTNNNNSLEENFKPSVEELPYHNHQNSQHLDDVSTYTNGFTPSSVDIEQLQNLGLNIGNTYNNMDNHLVQEVYQNSTWDPSVQDMDYVNHQEHRQLSEQQYQQFIEAQNHNQSYNPSTILDPHYPSPDVLNLLNLPRCSSSLLTNSSTICMTNPTQNPPNFHNSMTFLGDLPIGSSDNTSGSSVLYDPLYPLNLPPQPPALRELFQSLPRGYSMPTNSRNGSLFGGGDEMEGDGDMGVLEFNRVTASVGKGRGGKATKHFATEKQRREQLNGKYKILRDLIPSPTKTDRASVVGDAIEYIRELIRTVNELKLLVEKKRHGREMCKRLKTEDDAAESCNIKPFGDPDGSIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKVNCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKVNEGSSVYASAIANRVIDVMDTQYAAGLPHISRL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3352 515 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 386 IPR036638 GO:0046983
Mtr4g3352 515 SMART finulus 323 372 IPR011598 GO:0046983
Mtr4g3352 515 MobiDBLite consensus disorder prediction 33 73 - -
Mtr4g3352 515 CDD bHLH_AtMYC1_like 322 386 IPR045896 -
Mtr4g3352 515 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 317 366 IPR011598 GO:0046983
Mtr4g3352 515 PANTHER TRANSCRIPTION FACTOR BHLH91 40 507 IPR045895 GO:0006355|GO:0048658
Mtr4g3352 515 Gene3D - 315 392 IPR036638 GO:0046983
Mtr4g3352 515 MobiDBLite consensus disorder prediction 54 73 - -
Mtr4g3352 515 PANTHER TRANSCRIPTION FACTOR BHLH91 40 507 - -
Mtr4g3352 515 Pfam Helix-loop-helix DNA-binding domain 320 366 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3352 Mtr-Chr4 46824552 46827116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3352 40 511 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 35.922 3.30e-88 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g3352 HLH 4.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3352 - - gmx:100782512 679.863