Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3342 ATGGCTGAAAATAATTCTCATTCTCACTCTCAATCTCCCATACCATGTGACAACAAGCACCATGATCATGAACAAGTAGCTGGTTTTGATTGGATGGTTCTTGTAGCAGCCATTTTATGTGCCATTGTTTGTGCTCTTGGTCTTAACACAATGTTACAATGTGCTTTTCAATGTCTTGGTCGTGTAGTTACTGAGCCTATGCAATGGATTGCTTCTAGGAGGTTGAATTCCGGAATCAAGAAAAAAGAAATGGTGGCTTTACCAACTTCAACATTTAGTACTCATGACTCAGGTTCTCCATCTTCAACTTCTAGTTGTGTAATTTGTTTAGCTGAGTTCTGTAATGGAGACCAGATAAGGTTCCTACCAAAATGCAATCATCATTTCCATGTGGTTTGTATTGATAAGTGGTTGTTATCTCATTCTTCTTGTCCTACTTGCAGGCATCTTACTCAAGTCTAG 462 0.3874 MAENNSHSHSQSPIPCDNKHHDHEQVAGFDWMVLVAAILCAIVCALGLNTMLQCAFQCLGRVVTEPMQWIASRRLNSGIKKKEMVALPTSTFSTHDSGSPSSTSSCVICLAEFCNGDQIRFLPKCNHHFHVVCIDKWLLSHSSCPTCRHLTQV* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3342 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Mtr4g3342 153 Pfam Ring finger domain 105 148 IPR001841 -
Mtr4g3342 153 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 150 - -
Mtr4g3342 153 PANTHER OS06G0666500 PROTEIN 15 150 - -
Mtr4g3342 153 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Mtr4g3342 153 SUPERFAMILY RING/U-box 105 150 - -
Mtr4g3342 153 SMART ring_2 106 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3342 Mtr-Chr4 46748633 46749563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3342 26 150 C3H Transcription Factor Family AT2G17450 42.308 4.73e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3342 - K19040 cam:101507208 260.381