Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3318 ATGGCCGCCGATGATGAACCAATGCCTACTCGTTGGTCTTTCGAGGAGTTCAAAAAGTATTATGATGTTAGGCTTGGTAGGAAGAAACTTGTGGAGAATGGTGAGAATGCTGTTAGTAATGGAAATTCGTCCGGCATTGCATCCAATGGCAATTCACACGGCAAAGTAACATCGGATAGGGCTATTTATGATCAGTTTCAAAGCCAGGGGCAGAATCCGACGCATACAAATGGTTTTGGACCAAACGGTGTTGATGAAAAGCCGAAGAAGTCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATCATTCGCGGGAGTCCAAATGTGAAGTGGGAAAGCATCAAGGGTTTAGAGAATGCCAAACGTTTACTGAAAGAAGCTGTAGTGATGCCGATTAAGTATCCCAAGTACTTTACTGGTCTGTTATCACCATGGAAGGGTATTCTCCTTTTTGGGCCCCCAGGGACTGGAAAGACAATGCTTGCAAAGGCAGTTGCAACTGAGTGCAACACTACATTTTTTAATATTTCAGCATCGTCTATTGTCAGCAAATGGCGAGGTGATTCAGAGAAGTTAGTAAAGGTGTTATTTGAGCTTGCAAGGCATCACGCGCCCGCAACAATATTTCTTGACGAAATTGATGCAATCATTAGTCAACGTGGTGAGGGGCGCAGTGAACATGAAGCAAGTAGACGGTTAAAAACTGAACTACTCATTCAGATGGATGGTTTAGCACGGACGGATGAACTTGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTTAGACGTCTTGAGAAGCGAATCCTTGTACCGCTTCCAGAACCAGAAGCAAGAAGAGCAATGTTTGAGGAACTCCTTCCTCTGCAGCCTGATGAGGAACCGATGCCCTATGATTTACTGGTGGACCGGACAGAAGGATACTCAGGCTCGGATATTCGCTTACTTTGTAAAGAAACAGCAATGCAGCCATTGAGACGCTTAATGACACAACTTGAACAAGAACCAGATGTGGTGCCCGAAGAAGAGTTGCCAAAAGTTGGGCCAGTCGTGCCTGAAGATGTAGAGGCAGCTTTAAGGAACACACGGCCATCTGCTCATCTTCTTGCCCACAAATACGACACGTTTAATGCCGATTATGGTAGTCAAATACTTCAATGA 1209 0.4483 MAADDEPMPTRWSFEEFKKYYDVRLGRKKLVENGENAVSNGNSSGIASNGNSHGKVTSDRAIYDQFQSQGQNPTHTNGFGPNGVDEKPKKSLLPPFESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMFEELLPLQPDEEPMPYDLLVDRTEGYSGSDIRLLCKETAMQPLRRLMTQLEQEPDVVPEEELPKVGPVVPEDVEAALRNTRPSAHLLAHKYDTFNADYGSQILQ* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3318 402 MobiDBLite consensus disorder prediction 34 56 - -
Mtr4g3318 402 Pfam ATPase family associated with various cellular activities (AAA) 158 288 IPR003959 GO:0005524|GO:0016887
Mtr4g3318 402 Gene3D - 290 378 - -
Mtr4g3318 402 MobiDBLite consensus disorder prediction 68 92 - -
Mtr4g3318 402 MobiDBLite consensus disorder prediction 35 56 - -
Mtr4g3318 402 Gene3D - 117 383 IPR027417 -
Mtr4g3318 402 Pfam AAA+ lid domain 316 351 IPR041569 -
Mtr4g3318 402 CDD AAA 125 289 - -
Mtr4g3318 402 PANTHER AAA DOMAIN-CONTAINING 11 400 - -
Mtr4g3318 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 380 IPR027417 -
Mtr4g3318 402 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 11 400 - -
Mtr4g3318 402 SMART AAA_5 154 291 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3318 Mtr-Chr4 46459097 46466040 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3318 152 361 Calmodulin-binding Proteins AT3G56690 37.089 9.48e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3318 K07767 - gmx:100794098 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3318 4 46459097 46466040 Mtr4g3318 4 46459097 46466040 ECH