Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3305 ATGGGTCGTAAAAAGATAGAGATGGAACTTGTGGAGAACAGGAGTGCTAGGTATGTCACATTTTCAAAAAGAAAGAGTGGTATATTTAAGAAGGCAAGTGAGTTGTCAATTCTTTGTAATGCTAGAGTTGGTATAGTTGGATTTACCCCAAGTGGTAATCCATTTGCTTTTGGTTCTCCAAATTTCCAAGCTGTGGCTGAACAATACCTTCATGGAGGACAAGAATTAGAAGCTGGATCATCAAGGCAAATTGTTACACTCTCTGAAAATCCAAATATCAAATTGATGAACAAAGAATTGAGTGGTTTAACCGAAGAGCTGAAGAAGGTGGAGGAAGTTAAGAAAGGTAAAGCCCCTATTGCACTTTCTGATCTTAACTTAAAAGAACTTCTAAAAGTGAAGTCTTCGCTGAAAGAGCTTCATGGTGACATCGATGCATCATCTTCTTTGCTTCTTCTTTCAAAGAAGCCTATACGCATCATTGATTTGGTTTGTAAAAGAATGGGAAAATCCAATATTGTGAAAACTAGTTACTAG 537 0.3706 MGRKKIEMELVENRSARYVTFSKRKSGIFKKASELSILCNARVGIVGFTPSGNPFAFGSPNFQAVAEQYLHGGQELEAGSSRQIVTLSENPNIKLMNKELSGLTEELKKVEEVKKGKAPIALSDLNLKELLKVKSSLKELHGDIDASSSLLLLSKKPIRIIDLVCKRMGKSNIVKTSY* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3305 178 Coils Coil 93 113 - -
Mtr4g3305 178 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Mtr4g3305 178 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 161 - -
Mtr4g3305 178 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr4g3305 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr4g3305 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr4g3305 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr4g3305 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Mtr4g3305 178 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Mtr4g3305 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr4g3305 178 PANTHER MADS BOX PROTEIN 2 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3305 Mtr-Chr4 46338413 46339109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3305 1 156 Type I MADS-box Gene Family AT2G34440 40.805 4.46e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr4g3305 SRF-TF 2.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3305 - - mtr:MTR_4g094638 315.079