Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3298 ATGCCATCTCAAAACCTTAGTTTGACTCTAGTCATACTCATTTCAATTCTATCCATTATTGTTTCACATGCTGAAACATCAACCATTAAAGTTGAAATTGAAGCATTGAAAGCATTCAAAAAATCCATAACAAATGATCCAAACAAAGCTCTTGCAAATTGGATTGACACAATCCCTCATTGCAACTGGTCAGGCATTGCATGTAGCAATTCTTCAAAACATGTCATATCAATTTCACTCTTTGAACTTCAACTCCAAGGTGAGATTTCACCTTTCCTTGGAAACATTTCAACACTTCAACTTATTGATTTAACTTCAAATTCATTAACTGGTCAAATTCCACCTCAAATTAGTCTTTGCACTCAACTTACAACACTTTACCTTACTGGTAATTCTCTCTCAGGTTCAATCCCTCATGAATTAGGTAACCTTAAAATGTTGCAGTATTTGGATATAGGTAATAACTATCTCAATGGAACCTTACCTGTTAGCATATTCAACATAACTTCTTTGTTAGGTATTGCTTTCAATTTCAACAACCTTACTGGAACTATTCCATCAAATATAGGGAATTTAGTTAACACTATACAGATTGGAGGATTTGGTAATAGTTTTGTTGGATCTATACCTGTTTCTATAGGCCAATTAGGATCTTTGTTATCTCTTGATTTTAGTCAAAATAAGTTATCAGGTGTCATACCTAGAGAGATTGGAAACCTAACAAATTTACAATATCTTTTATTGCTTCAAAATTCATTGAGTGGAAAAATTCCTTCTGAGCTGGCTCTTTGTAGCAATCTTGTTAACCTTGAGTTATATGAAAATAAGTTCATTGGAAGTATTCCTCATGAGCTAGGGAATTTAGTTCAGTTGGAAACTTTGAGGTTGTTTGGTAATAACTTGAACTCAACAATACCGGATTCTATATTTAAGTTGAAATCGTTAACACATTTAGGATTATCAGAGAATAACTTAGAGGGAACAATTTCTTCTGAGATTGGATCTTTGAGTTCCTTAAAAGTGTTAACTCTTCATTTGAATAAGTTTACCGGGACGATTCCTTCGTCGATAACAAACTTGAGAAACTTGACATCTTTGTCCATGAGTCAGAATCTCCTTTCAGGTGAAATTCCTTCCAATATAGGTGTGCTTCAAAATTTGAAGTTTCTTGTCTTGAACGACAACTTTTTACACGGACCTGTTCCTCCTAGCATTACCAATTGTACTAGTTTGGTTAATGTGAGTTTATCTATTAATTCTTTAACTGGAAAAATTCCTGAGGGTTTTTCAAGGTTGCCAAATCTTACTTTCCTGTCCCTTCAATCCAACAAAATGAGTGGTGAAATACCAGATGATCTTTACATTTGCTCAAACCTTAGTACTTTACTTTTGGCGGATAACAGCTTCAGTGGATCGATAAAATCCGGTATCAAAAATCTGTTTAAACTCATGCGTTTGAAGCTGAATAAAAATGCTTTCATAGGACCAATTCCACCAGAGATTGGTAACTTGAATAAACTCATCATTTTGTCTCTTTCTGAAAATAGATTATCAGGTCGTATTCCAATAGAATTGTCCAAACTTTCTCTCCTTCAAGGACTCTCTCTTTATGACAATGCATTAGAAGGCACAATACCTGATAAACTTTCTGAACTAAAAGAATTGACTATACTTTTGCTGCATGAAAACAAGTTGGTTGGTCGAATACCGGATTCTATCTCGAAGCTTGAGATGCTTTCATACTTAGATCTTCACGGAAACAAACTTAATGGTTCCATTCCGAAAAGCATGGGGAAGCTTGATCATCTTCTACTGTTGGATCTCTCTCACAACCGCCTCTCAGGATTGATTCCAGGATACGTCATTGCACACCTCAAAGACATGCAGATGTATCTTAACCTTTCTTACAACCACTTTGTAGGAAGTGTTCCATCTGAACTAGGGATGTTGGAAATGGTACAAGCCATTGATGTTTCAAACAATAATCTTTCAGGTTTCCTTCCGAAGACACTTGCCGGGTGCAGAAATATGTTTAGTCTTGATTTCTCAGTAAACAATATTTCAGGTCCTATCCCTGCTGAAGTTTTTAGTGGCATGGACTTGCTTCAGAGCTTAAATCTTTCAAGAAATCATTTAGATGGTGAAATACCCGAAAGCATGTCTCAGATTAAGAATCTTAGTTCGTTAGATCTTTCTCAGAATAACTTGAAGGGAACTATTCCTGAGGGGTTTGCCAATCTTTCCAACCTGATGCAGCTAAACTTTTCTTTTAATCAACTAGAAGGTCCTGTGCCTTTGACTGGAATATTTTCACATATCAACGAATCTAGTATGATGGGAAACCAGGCTCTTTGTGGAGCAAAATTCCTAAGTCCATGCAGAGAGAACGGTCATTCTCTATCCAAGAAGAGCATAGCTATCATTGCTGCACTTGGATCTCTTGCTGTACTTCTACTTGCAGTGCTTCTGATTTTATATTTCAACCGAGGCACCATGTTCGGTAATTCTATAAAGAGTGTTGATACTGAGAATCATGAATCAGTGAACGGTTCAGCATTGGCTCTTAAAAGATTCAGTCCAAAGGAGTTAGAAAATGCAACCGGTTGTTTCAGCTCAGACTACATCATTGGTTCTAGCAGTTTGAGCACCGTTTACAAGGGTCAATTTGAAGATGGTCAGATTGTAGCCATAAAAAGGTTGAATTTGCACCAATTCTCAGCTAATACCGACAAGATATTCAAGAGAGAAGCCAGCACCTTGTGCCAGCTGAGACATAGGAATTTAGTTAAGATACATGGATATGCTTGGGAAAGTCAGAAAATAAAGGCTTTAGTTCTAGAGTACATGGAGAATGGGAATTTGGATAGCATCATACATGACAGAGAAGTTGATCAGTCGAGGTGGACATTATCTGAAAGACTCCGAGTTTTCATTTCTATTGCTAGTGGATTGGATTACTTGCACTCTGGTTATGATTTTCCCATTGTGCATTGTGATCTAAAGCCTTCCAACATCCTTTTAGATAGAGATTTTGAAGCACATGTCAGTGATTTTGGGACAGCTCGAATACTTGGTCTTCATTTGCAAGATGGCAGTGCCCTTTCCTCAACAGCAGCTTTGCAAGGCACAATTGGCTATTTGGCACCAGAATTTGCCTACATGAGGAAAGTAACGACGAAAGTGGATGTGTTCAGCTTTGGCATCATAGTAATGGAATTTCTAACAAAAAGAAGGCCAACAGGGCTCTCAGAATCAACAAGTTTGCGTGATGTAGTGGCAAAAGCCGTTGCAAATGGAACGGAACAGCTTGTCAGCATTGTGGACCCTGAATTGATCACAAAAGACAATGGAGAAGTGTTGGAAGAGCTCTTTAAGCTTTCATTGTGCTGCACCCTCTCTGATCCTGAACATCGTCCTAATATGAATGAAGTTTTATCTGCACTTGTGAAGCTTAACACAGCAATGCTATCTTGCTGTGTTGTTAAATAA 3489 0.3735 MPSQNLSLTLVILISILSIIVSHAETSTIKVEIEALKAFKKSITNDPNKALANWIDTIPHCNWSGIACSNSSKHVISISLFELQLQGEISPFLGNISTLQLIDLTSNSLTGQIPPQISLCTQLTTLYLTGNSLSGSIPHELGNLKMLQYLDIGNNYLNGTLPVSIFNITSLLGIAFNFNNLTGTIPSNIGNLVNTIQIGGFGNSFVGSIPVSIGQLGSLLSLDFSQNKLSGVIPREIGNLTNLQYLLLLQNSLSGKIPSELALCSNLVNLELYENKFIGSIPHELGNLVQLETLRLFGNNLNSTIPDSIFKLKSLTHLGLSENNLEGTISSEIGSLSSLKVLTLHLNKFTGTIPSSITNLRNLTSLSMSQNLLSGEIPSNIGVLQNLKFLVLNDNFLHGPVPPSITNCTSLVNVSLSINSLTGKIPEGFSRLPNLTFLSLQSNKMSGEIPDDLYICSNLSTLLLADNSFSGSIKSGIKNLFKLMRLKLNKNAFIGPIPPEIGNLNKLIILSLSENRLSGRIPIELSKLSLLQGLSLYDNALEGTIPDKLSELKELTILLLHENKLVGRIPDSISKLEMLSYLDLHGNKLNGSIPKSMGKLDHLLLLDLSHNRLSGLIPGYVIAHLKDMQMYLNLSYNHFVGSVPSELGMLEMVQAIDVSNNNLSGFLPKTLAGCRNMFSLDFSVNNISGPIPAEVFSGMDLLQSLNLSRNHLDGEIPESMSQIKNLSSLDLSQNNLKGTIPEGFANLSNLMQLNFSFNQLEGPVPLTGIFSHINESSMMGNQALCGAKFLSPCRENGHSLSKKSIAIIAALGSLAVLLLAVLLILYFNRGTMFGNSIKSVDTENHESVNGSALALKRFSPKELENATGCFSSDYIIGSSSLSTVYKGQFEDGQIVAIKRLNLHQFSANTDKIFKREASTLCQLRHRNLVKIHGYAWESQKIKALVLEYMENGNLDSIIHDREVDQSRWTLSERLRVFISIASGLDYLHSGYDFPIVHCDLKPSNILLDRDFEAHVSDFGTARILGLHLQDGSALSSTAALQGTIGYLAPEFAYMRKVTTKVDVFSFGIIVMEFLTKRRPTGLSESTSLRDVVAKAVANGTEQLVSIVDPELITKDNGEVLEELFKLSLCCTLSDPEHRPNMNEVLSALVKLNTAMLSCCVVK* 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3298 1162 SUPERFAMILY Protein kinase-like (PK-like) 847 1152 IPR011009 -
Mtr4g3298 1162 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Mtr4g3298 1162 CDD STKc_IRAK 876 1151 - -
Mtr4g3298 1162 Gene3D Ribonuclease Inhibitor 193 262 IPR032675 -
Mtr4g3298 1162 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 294 378 - -
Mtr4g3298 1162 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 121 165 - -
Mtr4g3298 1162 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 1 118 - -
Mtr4g3298 1162 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 366 1153 - -
Mtr4g3298 1162 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 165 299 - -
Mtr4g3298 1162 Gene3D Transferase(Phosphotransferase) domain 1 949 1157 - -
Mtr4g3298 1162 SMART serkin_6 870 1155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3298 1162 Gene3D Ribonuclease Inhibitor 29 191 IPR032675 -
Mtr4g3298 1162 SUPERFAMILY L domain-like 32 302 - -
Mtr4g3298 1162 SUPERFAMILY L domain-like 553 787 - -
Mtr4g3298 1162 ProSiteProfiles Protein kinase domain profile. 870 1156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3298 1162 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 294 378 - -
Mtr4g3298 1162 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 118 - -
Mtr4g3298 1162 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 165 299 - -
Mtr4g3298 1162 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 366 1153 - -
Mtr4g3298 1162 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 121 165 - -
Mtr4g3298 1162 Gene3D Ribonuclease Inhibitor 263 380 IPR032675 -
Mtr4g3298 1162 Pfam Leucine rich repeat 654 712 IPR001611 GO:0005515
Mtr4g3298 1162 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Mtr4g3298 1162 SMART LRR_typ_2 699 722 IPR003591 -
Mtr4g3298 1162 SMART LRR_typ_2 360 384 IPR003591 -
Mtr4g3298 1162 SMART LRR_typ_2 723 746 IPR003591 -
Mtr4g3298 1162 SMART LRR_typ_2 650 673 IPR003591 -
Mtr4g3298 1162 SMART LRR_typ_2 747 772 IPR003591 -
Mtr4g3298 1162 SMART LRR_typ_2 504 528 IPR003591 -
Mtr4g3298 1162 SMART LRR_typ_2 432 456 IPR003591 -
Mtr4g3298 1162 SMART LRR_typ_2 600 624 IPR003591 -
Mtr4g3298 1162 SMART LRR_typ_2 288 312 IPR003591 -
Mtr4g3298 1162 SMART LRR_typ_2 216 240 IPR003591 -
Mtr4g3298 1162 SMART LRR_typ_2 144 168 IPR003591 -
Mtr4g3298 1162 SMART LRR_typ_2 552 576 IPR003591 -
Mtr4g3298 1162 SMART LRR_typ_2 336 359 IPR003591 -
Mtr4g3298 1162 Pfam Protein kinase domain 873 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3298 1162 SUPERFAMILY RNI-like 221 618 - -
Mtr4g3298 1162 Gene3D Ribonuclease Inhibitor 381 625 IPR032675 -
Mtr4g3298 1162 Gene3D Ribonuclease Inhibitor 626 801 IPR032675 -
Mtr4g3298 1162 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672|GO:0006468
Mtr4g3298 1162 Gene3D Phosphorylase Kinase; domain 1 832 948 - -
Mtr4g3298 1162 PRINTS Leucine-rich repeat signature 603 616 - -
Mtr4g3298 1162 PRINTS Leucine-rich repeat signature 723 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3298 Mtr-Chr4 46262073 46266074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3298 6 1151 Receptor kinase-like Gene Family AT5G46330 53.840 0.0 1139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr4g3298 Pkinase 4.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3298 K13420 - gmx:100817960 1651.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3298 4 46262073 46266074 Mtr4g3298 4 46262073 46266074 ECH