Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3289 ATGTCTGATGAACCTAAACCTTATTTCCAAGACTTTATGCTAGATCAAGGATCTAACATGTACTCATGTGAAAAACAATTTTCAACCTTTCATAACTTAGATTCATCACAACCTAATTACTTTGATCCATCATCTTATAATATGAGTTTCACAGAAAGTTTACAAGGAGGAAACATGGATCACTACAATTCACCACTTGCAACTTCTTTTGGAGTACTATCTCCTTCTTCATCAGAGGTTTTTTCATCTGTTGATCAAGGAAATCAAAAACCTTCAGCTGGAGAATTAGGTGGTGGTGATCAAACCCTTGCTACACTTAACTCATCTATCTCTAATTCCTCATCTTCTGAAGCTGGAGGAGTAGAAGAAGAAGATTCAGGAAAGAGAAAGAAAAATATTGGACAGGTTAAAGAAGAACCAGGACAAGAAAGCTCTAAAAATGGGAACAACAAGGTGGATAAGAAGAAAGGAGAGAAGAAGCAAAAAGAACCAAGGTTTGCTTTCATGACAAAGAGTGAAGTTGATCAGCTAGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCTGTTAAGAATAGTCCATACCCTAGGAGCTATTACAGGTGTACAACACAGAAATGTACAGTGAAAAAACGCGTAGAAAGATCATATGAAGACCCAACAACTGTGATAACAACATATGAAGGTCAGCATAATCATCCTGTCCCCACTTCCCTAAGAGGCAATGCGGCTGCAATGTTCACACCTTCTAATTTGCTATCTACACCTACACCTTTCTCATATGGGTCAAACTTCCCTCAAGATCTTCTTCTCCACATGCACCACCACAACACCTTCAATATCACCCAACCAACAACACATACTACTAATAACGTTGCTGGTTCCGTTTACTCACACAACAACATTAACAACTCATTTCTTCAACAATATCAACAACAACTTCCTCCTGATCAATATGGACTCCTTCAAGACATTGTCCCTTCCATGTTCCTCAACAGGACCAATCACAACTAA 1017 0.3835 MSDEPKPYFQDFMLDQGSNMYSCEKQFSTFHNLDSSQPNYFDPSSYNMSFTESLQGGNMDHYNSPLATSFGVLSPSSSEVFSSVDQGNQKPSAGELGGGDQTLATLNSSISNSSSSEAGGVEEEDSGKRKKNIGQVKEEPGQESSKNGNNKVDKKKGEKKQKEPRFAFMTKSEVDQLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSYEDPTTVITTYEGQHNHPVPTSLRGNAAAMFTPSNLLSTPTPFSYGSNFPQDLLLHMHHHNTFNITQPTTHTTNNVAGSVYSHNNINNSFLQQYQQQLPPDQYGLLQDIVPSMFLNRTNHN* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3289 338 MobiDBLite consensus disorder prediction 101 120 - -
Mtr4g3289 338 Gene3D WRKY domain 162 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr4g3289 338 Pfam WRKY DNA -binding domain 178 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g3289 338 SUPERFAMILY WRKY DNA-binding domain 169 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr4g3289 338 MobiDBLite consensus disorder prediction 77 166 - -
Mtr4g3289 338 SMART WRKY_cls 177 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g3289 338 ProSiteProfiles WRKY domain profile. 172 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g3289 338 MobiDBLite consensus disorder prediction 121 137 - -
Mtr4g3289 338 MobiDBLite consensus disorder prediction 148 166 - -
Mtr4g3289 338 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 37 331 IPR044810 GO:0003700
Mtr4g3289 338 PANTHER WRKY TRANSCRIPTION FACTOR 81 37 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3289 Mtr-Chr4 46203583 46205668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3289 28 332 WRKY Transcription Factor Family AT4G18170 48.867 3.01e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr4g3289 WRKY 1.9e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3289 4 46203583 46205668 Mtr4g3289 4 46203583 46205668 ECH