Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3252 ATGGTGACATTTTCCGTTGGTGGCTGCGACGACGGTGAAGGACCTAGCAACCCAAATCAGAAGCGTCGAAGGGTCGACGCCGGTGAAGAAGTCGCAGCAGCAACAACTACAAGAGAAGAAGAAGAAGAAGAAGAAAATCAACAACCTCAAGAAGGGTTTGAAATGGAAAATCCCCCAATTGAAACCCTAGAAAATGATGCAAATGAAAGAAATTCGGTTGGATCCAACGCGGGACAACAGAATAATGATCTGAGTAAGAAGGTTTCTGCTATCATTTCTGATCCTGATGTTCTTGATTGCTTCATTTGCTCTGAACCGTTGGCAGTTCCTATTTATCAGTGTGAGAATGGGCATATTGCTTGCTCTAAATGTTGTGGCGAACTTAGGAACAAATGTCCTATGTGTTCAATGCCCATTGGGTACAATCGTTGTCGGGCTGTGGAGAAGTTGCTGGAATCTATTAAAATATCATGCCCAAATGCAAAATATGGCTGCAAAGATATGTTTAGTTGCAGTATGAAAAGTAGCCACGAGAAGGAATGCATATATATACCATGTAAATGCCCACATACAGGCTGCGGTTTTCTTGCCTCATCCAAGGAGTTAGCTCTCCACTTCAGCCACAGACATGCAGGCTTTGGAATACAGTTTACCTATGACAAATTTATTTCTGTCTCCTTAAATACCCGACAGAAACAAATCGTTCTTCTAGATCAAAATGACGCAAGATTGTTTATTGTTCACAACCACATTGTTCAACACGGAAATATGGTCCATATTAGTTGCATGGGCCCCAAAGCAATTACAGATACTCATTATGATGTCTTGGCTAGGTCTCAAGGGAGCACATTAATATTGCAATCTTCTACGAAGACCATTCAAGACAATAATGGTGATGCTCCTACAGCTGGATTTCTTGTGATACCTTCAGATCATTTTGGTTTTGGACAACTCAAATTGGATATTCGTATAAAGTCTCACTAA 984 0.4106 MVTFSVGGCDDGEGPSNPNQKRRRVDAGEEVAAATTTREEEEEEENQQPQEGFEMENPPIETLENDANERNSVGSNAGQQNNDLSKKVSAIISDPDVLDCFICSEPLAVPIYQCENGHIACSKCCGELRNKCPMCSMPIGYNRCRAVEKLLESIKISCPNAKYGCKDMFSCSMKSSHEKECIYIPCKCPHTGCGFLASSKELALHFSHRHAGFGIQFTYDKFISVSLNTRQKQIVLLDQNDARLFIVHNHIVQHGNMVHISCMGPKAITDTHYDVLARSQGSTLILQSSTKTIQDNNGDAPTAGFLVIPSDHFGFGQLKLDIRIKSH* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3252 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 31 326 - -
Mtr4g3252 327 MobiDBLite consensus disorder prediction 1 58 - -
Mtr4g3252 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 206 IPR013083 -
Mtr4g3252 327 SUPERFAMILY RING/U-box 99 142 - -
Mtr4g3252 327 MobiDBLite consensus disorder prediction 36 50 - -
Mtr4g3252 327 MobiDBLite consensus disorder prediction 16 35 - -
Mtr4g3252 327 ProSiteProfiles Zinc finger SIAH-type profile. 153 211 IPR013010 GO:0008270
Mtr4g3252 327 SUPERFAMILY TRAF domain-like 153 324 - -
Mtr4g3252 327 Pfam Seven in absentia protein family 143 298 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr4g3252 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 31 326 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3252 Mtr-Chr4 45942275 45945274 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3252 96 275 C3H Transcription Factor Family AT2G41980 27.523 4.42e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3252 K04506 - gmx:100797881 385.956