Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3250 ATGGCTACCACCATTTCATCAACTTGCTTCATCTTTGTTCCTATAATTTTATCATCGTTGTTATGTCCTAAAACAACATTATGTGCAACTGTCCTAGAAGACCTCAAAAACTTACACAAACCACCAGATTTCAACACTACCATTTTCAACAACTGTCTCAAAAACCCTTCTCTCAGATACTGCACTTCCTCCCCCATGGTTGACCTTGATGAAATATTCAAACACACTATTGTTGCTAGTCATCTATGCAATGAATCTAACAACCCCAATTGTGTTGAATCATTTCCTAAAATTGATCTTCGTAACCGGCCAAACATTGCATCTCTTTACTTGTCTTTCACTTTCTTTTGGAAATATTGTCCTTTGAGTATTCAATCCATTGATTTCTCCAACAATTCTATAAAGGGTGGTTTTCCAAATGATGTTCTTTATTGCACACAAATTCAGTCTCTTGATTTAGGTATCAATGAGTTTTCTGGTGAAATTCCAATTCAAAGTTTCTCTTCACTAACTAACCTCACTTTTCTTAACCTTTCTTATAACTGTTTCTCAGAGAGTGAAATTTCTGATTCACAATTCTTCAAAAAGTTTAATGCTTCTAGTTTTCTTCATTCTGGTGCTCTTGTTGATCACAAAAAGTTTACTATAAAAGCTATCATTTTATTGGTTGGTTTTCCTATTCTTGTCATTTTGATGGTAATTTTCTTGGGATGGCTTTGTTTTCAAAGACCTGATTTTCTGCCAAGAATACTTCAAAGTAGTAGAGGATATACATTTACACCAGCAATTCTTGAGGCTGCAACTTGTGGTTTTTCGAACAAAAATTTGGTTGGTAAGAGTGATATTGTCCATATCTACAAAGGGGTGTTAAGAGATGCAACTGAAGTGAAAATTGAGATGTATTGGGATGATATATCAAGGGATAGCTATCATAAATTTGTTGAGGAATGCAAGATTCTGTCTGAGTTAAATCACAAGAATCTTGTTAAGGTTTTAGGATGGTGTAAAGGTAGAAAATTCAGGGCTATTATAACAGAATGGACAGAAGAAGAAAATGTTGAAATGTGGCTATCAGGGGCAAGTCCATCATGGAATCATAGAGTGAAAGTTTTGATGGGAGTTGTTGAATGCATGCTATATCTTCATGAGGAGTGGCCTGAAGTTGATTACGATCTCAAGACAAGTAGTGTTTTGTTATCTGATAAACTAGAACCATTGATTTCAAGGTTTCAAGTTGGAGAAAGAAACAACAGTAGAAGAAAGGTGTGTAAGTTTGGAGTATTTCTGCTGGAGATGATACTAAACAAGAGCGTTCAAGAGGACTTTGATGGAGATGATGCCGGTTTTATTAGCTACATGAGAACTCTTCGTCTTTCAGAAATGCAACAAATGGTTGATGAGAGAATAAATGTTACTGAAACAACTTTGCATCAAGTTAAACAGGCTTTATCCCTAGGATTAATGTGCATAGACCAATCAAGCAAAGAGCAACCAAGCTTGGCACAAATATTTAATATTGTATCAAAGGCATACAAGTCTAACCTTGTTTTGCCATCTGCAAATCATAAAACATTTCATGGAGATAAAGTTATGGGACACAAGCATTTTCAGTTTAGATAA 1620 0.3506 MATTISSTCFIFVPIILSSLLCPKTTLCATVLEDLKNLHKPPDFNTTIFNNCLKNPSLRYCTSSPMVDLDEIFKHTIVASHLCNESNNPNCVESFPKIDLRNRPNIASLYLSFTFFWKYCPLSIQSIDFSNNSIKGGFPNDVLYCTQIQSLDLGINEFSGEIPIQSFSSLTNLTFLNLSYNCFSESEISDSQFFKKFNASSFLHSGALVDHKKFTIKAIILLVGFPILVILMVIFLGWLCFQRPDFLPRILQSSRGYTFTPAILEAATCGFSNKNLVGKSDIVHIYKGVLRDATEVKIEMYWDDISRDSYHKFVEECKILSELNHKNLVKVLGWCKGRKFRAIITEWTEEENVEMWLSGASPSWNHRVKVLMGVVECMLYLHEEWPEVDYDLKTSSVLLSDKLEPLISRFQVGERNNSRRKVCKFGVFLLEMILNKSVQEDFDGDDAGFISYMRTLRLSEMQQMVDERINVTETTLHQVKQALSLGLMCIDQSSKEQPSLAQIFNIVSKAYKSNLVLPSANHKTFHGDKVMGHKHFQFR* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3250 539 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 7 538 - -
Mtr4g3250 539 Pfam Protein tyrosine and serine/threonine kinase 275 426 IPR001245 GO:0004672|GO:0006468
Mtr4g3250 539 Gene3D Ribonuclease Inhibitor 50 213 IPR032675 -
Mtr4g3250 539 SUPERFAMILY Protein kinase-like (PK-like) 253 508 IPR011009 -
Mtr4g3250 539 Gene3D Phosphorylase Kinase; domain 1 253 347 - -
Mtr4g3250 539 SUPERFAMILY L domain-like 76 195 - -
Mtr4g3250 539 Gene3D Transferase(Phosphotransferase) domain 1 358 528 - -
Mtr4g3250 539 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 7 538 - -
Mtr4g3250 539 ProSiteProfiles Protein kinase domain profile. 271 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3250 Mtr-Chr4 45935249 45937169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3250 123 414 Receptor kinase-like Gene Family AT2G23950 26.781 1.95e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Mtr4g3250 PK_Tyr_Ser-Thr 1.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3250 - - gmx:100779045 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3250 4 45935249 45937169 Mtr4g3250 4 45935249 45937169 ECH