LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g3217	ATGTCAGACGAGGATGAGTATCGTTGTTTTGTTGGTGGCCTTGCTTGGTCAACATCCGATAGAAAGTTAAGGGATACATTTGAAAAGTTTGGCAAGCTTACAGAGGCCAAGGTGGTTGTTGACAAATTCTCTGGACGCTCCCGTGGTTTTGGATTTGTCACATATGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATCGATTTAGATGGCCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCCGCTAGAGATGATGGTGATCGCTACCGAGAGCGTGGTCGCGACCGTGATCGTGATTACCGAGGTGGTCGAGGATCTAATGATGGAGGATGCTTCAATTGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGGTGAAGGGGGAAGAGGGGGAGGGGGAAGGTATGGTGGTAGAGAAAGTAGATATGGTGGAAGTGGTGGTGGTGGTGGTGGTCACTATGGTCCAGATAGAAATGGAGATCGTTCTTCTGGCGGTCGCAGCAGGGATGGTGGTAGTCGTGGAGATTCTGGAAGTGATCGATACTATCGTGATCGTGATCGTGCTGGACCATATGAACGACGTGGATCTGGAGGCGGCTATCGTTGA	636	0.4858	MSDEDEYRCFVGGLAWSTSDRKLRDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTYDEKKAMEDAIDAMNGIDLDGRTITVDRAQPQQGSARDDGDRYRERGRDRDRDYRGGRGSNDGGCFNCGKPGHFARECPSGEGGRGGGGRYGGRESRYGGSGGGGGGHYGPDRNGDRSSGGRSRDGGSRGDSGSDRYYRDRDRAGPYERRGSGGGYR*	212

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g3217	211	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	1	169	-	-
	Mtr4g3217	211	Gene3D	-	116	177	-	-
	Mtr4g3217	211	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Mtr4g3217	211	MobiDBLite	consensus disorder prediction	88	112	-	-
	Mtr4g3217	211	SMART	c2hcfinal6	118	134	IPR001878	GO:0003676\|GO:0008270
	Mtr4g3217	211	PANTHER	TRANSFORMER-2-RELATED	1	169	-	-
	Mtr4g3217	211	Pfam	Zinc knuckle	118	134	IPR001878	GO:0003676\|GO:0008270
	Mtr4g3217	211	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Mtr4g3217	211	SUPERFAMILY	Retrovirus zinc finger-like domains	111	136	IPR036875	GO:0003676\|GO:0008270
	Mtr4g3217	211	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	10	79	IPR000504	GO:0003723
	Mtr4g3217	211	MobiDBLite	consensus disorder prediction	82	211	-	-
	Mtr4g3217	211	SUPERFAMILY	RNA-binding domain, RBD	3	117	IPR035979	GO:0003676
	Mtr4g3217	211	MobiDBLite	consensus disorder prediction	169	202	-	-
	Mtr4g3217	211	Gene3D	-	1	115	IPR012677	-
	Mtr4g3217	211	ProSiteProfiles	Zinc finger CCHC-type profile.	119	134	IPR001878	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g3217	Mtr-Chr4	45621584	45623893	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g3217	9	84	Eukaryotic Initiation Factors Gene Family	AT4G34110	38.158	1.45e-07	49.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g3217	-		-	gmx:100815224	217.624