Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3213 ATGGTAGATAATAATAATAACAATGTTAATCTTCCACCCGGTTTTAGATTTTATCCCACAGATGAAGAGCTTGTGGTCCATTTTCTTCATAGAAAGGCTTCTCTTTTACCTTGTCATCCAGATGTTATCCCTGATCTTGACCTCTATCCATTTGATCCATGGCAACTTCAAGGTAGAGCTTTGGAAGAGGGAAATCAATGGTACTATTATAGTAGAAGGACACAAAATAGAATGACTAACAATGGTTATTGGATGCCAATGGGAATGGAAGAACAAGTTGTAACAAGCTCAAGCAATAAGAGAGTTGGTATGAAGAAATATTATGTGTTCCATATTGGAGAAGCACCTAATGGTAATCAAACCAATTGGATAATGCAAGAGTATCGTCTATCAGATTCTGCTTCTTCCTCAACCAGATCATCATCCAAAAGAAAATCACAACCAAAATCATGGGTGATATGTCGAGTTTATGAGCGTGATGAAGATGACCAAGATGGAGATGGGACAGAGCTATCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGATGAAGTAAGCTTGCCAAATTAG 576 0.3733 MVDNNNNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRTQNRMTNNGYWMPMGMEEQVVTSSSNKRVGMKKYYVFHIGEAPNGNQTNWIMQEYRLSDSASSSTRSSSKRKSQPKSWVICRVYERDEDDQDGDGTELSCLDEVFLSLDDLDEVSLPN* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3213 191 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Mtr4g3213 191 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 8 188 - -
Mtr4g3213 191 Pfam No apical meristem (NAM) protein 12 130 IPR003441 GO:0003677|GO:0006355
Mtr4g3213 191 SUPERFAMILY NAC domain 7 158 IPR036093 GO:0003677|GO:0006355
Mtr4g3213 191 ProSiteProfiles NAC domain profile. 11 159 IPR003441 GO:0003677|GO:0006355
Mtr4g3213 191 PANTHER NAC TRANSCRIPTION FACTOR 56 8 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3213 Mtr-Chr4 45573249 45574599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3213 10 185 NAC Transcription Factor Family AT1G69490 39.474 1.21e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr4g3213 NAM 4.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3213 - - gmx:100788893 327.791