Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3210 ATGAACAACAGCAAGATGAAGAAGGTTTCGAAGTTGAGGACTTCGAACGAGAACGTTTCGCCATTGATGGTCGAGTTGGATGATAACAGAGGACTACGTTATCTCCAATCAACAACGGTGAGTCCAGGTTTTCAACCCTACGCCGCCGAGAACTTCGACGTTACCGGCTCGCCGTCGCAGCTCGCTAAATACTTCTACGCTGTATCTCCGGTTTCTGCTAAATCAGGTGACTCCTTCACTTCTCCGATTTACGGCTCCAGTAAGTACAGGTTAGCAAAAACGCCGCCGTACTCCGGTACCAGCAACAGCTCAGGGGGGAATAGTAGCTTCAGTTCTCGCGGTAGATTGTCTCTCTCGCCGCTTGCTTCAATTGAGAATTTGGAGAGGAAGCAGCTCTCGTCGCCGCGGATGTATCAAACGCCAGTGAAGGGTGGTGAGGAAGTTATTGTGATGGATGATATACAGGTGAGGTCAATGTCAGGAGGAAAGAACAGAAGATCTTCATCTTCTTCTTCTTCTTCCGGTAGAGGCTCTTCATCTTCCTCTTCTTCGTCCTCGAAGAGTGTGTTGTTTAAGAAGGAGGTTTGCAGAGCATGGGAGGAATCTGGAAACTGCCGCTATAACTCCAAATGCCAGTTTGCCCATGGAAGAGAAGAGCTTCATCTAAGTCGTCTCTCCATGAAGAGTAAATCTGAGGCACAGATGGGCAGATTATCTATGAGAGCAGGACTGTGCTTGTATGGCCCGGACAGCCGCATTCTTCCTGAATCCGCTGAAGTAGCTGAATCTGGACCTGTAGTCACAAGACTTGCAAGATCTCAACCAGCTTCCCCTGAACCTCATCGCACTCATGCCAGCCTGGACAGCCGTATTGTTCCTGAATCCGCTGAAGTAGCTGAACCTGGACCTGCAGTCACAAGACTTGCAAGATCCCAACCAACTTCGCCTGAACCTCATCGTACCCCTGTCAATCCAAACACCATCAGCGACTGGTCACCCCTGGACGATGGCATTGAGGCTGTCCTCCCAAATGGTTCAGACAGAGTTCCCTCTAGGGAGGAAGTTGATGCATACATTTTTGGCATTCTCAATCAGCCGACCACTAAAAGAAGACTACCAGTGTTTGCGGCACTTTGCGAGGGGCAGTAA 1149 0.497 MNNSKMKKVSKLRTSNENVSPLMVELDDNRGLRYLQSTTVSPGFQPYAAENFDVTGSPSQLAKYFYAVSPVSAKSGDSFTSPIYGSSKYRLAKTPPYSGTSNSSGGNSSFSSRGRLSLSPLASIENLERKQLSSPRMYQTPVKGGEEVIVMDDIQVRSMSGGKNRRSSSSSSSSGRGSSSSSSSSSKSVLFKKEVCRAWEESGNCRYNSKCQFAHGREELHLSRLSMKSKSEAQMGRLSMRAGLCLYGPDSRILPESAEVAESGPVVTRLARSQPASPEPHRTHASLDSRIVPESAEVAEPGPAVTRLARSQPTSPEPHRTPVNPNTISDWSPLDDGIEAVLPNGSDRVPSREEVDAYIFGILNQPTTKRRLPVFAALCEGQ* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3210 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 217 IPR000571 GO:0046872
Mtr4g3210 382 MobiDBLite consensus disorder prediction 88 114 - -
Mtr4g3210 382 MobiDBLite consensus disorder prediction 160 187 - -
Mtr4g3210 382 Gene3D - 182 222 - -
Mtr4g3210 382 PANTHER CCCH ZINC FINGER/TIS11-RELATED 3 378 IPR045877 GO:0003729
Mtr4g3210 382 MobiDBLite consensus disorder prediction 308 331 - -
Mtr4g3210 382 SMART c3hfinal6 190 217 IPR000571 GO:0046872
Mtr4g3210 382 MobiDBLite consensus disorder prediction 156 187 - -
Mtr4g3210 382 SUPERFAMILY CCCH zinc finger 189 221 IPR036855 GO:0046872
Mtr4g3210 382 MobiDBLite consensus disorder prediction 302 331 - -
Mtr4g3210 382 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE PROTEIN 3 378 - -
Mtr4g3210 382 ProSiteProfiles Zinc finger C3H1-type profile. 190 218 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr4g3210 zf-CCCH 4.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3210 K18753 - gmx:102661448 219.164