Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3206 ATGAATGCTTCATCCTTAACCTCAAACCTAAGCATTTCAAATTCAAAGCAATTTCATCACCTTAGTAAACAGCTAAGACCTTCTCACGTTCACTTTGCAACAATTTCATGTAGAGCAACAAAGCTAGTGGAAGAAACCAAGAATGGATCAAATTTCTACAAAATGTTGTCGGTAAATCCGAAAAGTGCAACAATGGAAGATATAAAGAGAGCTTATAGATCAATGGCACTTCAGTATCATCCTGATGTGTGTCATGATCCTTCCATGAAAGAGGAATCAACTAAAATATTTGTTCGGTTAAATGCAGCTTATGAAACTTTGTCGAATCCTATGCTTCGTGAACAATATGATAGTGAATTGGGTTTGAGAAATAATATGATGAATAATAATAATATTGTAAATGAAGAGATATGGAGAAGTAGGTGGCAAGAACAAGTGGTTGAGTTGAAGAAAAGGTCTAATAGACGTATGGAACAAAGAGGAAGGTCTTGGGGTAGCACTAGCAGAATGAGGACACAAAGCATGAAAGATCGAAACTAG 540 0.3593 MNASSLTSNLSISNSKQFHHLSKQLRPSHVHFATISCRATKLVEETKNGSNFYKMLSVNPKSATMEDIKRAYRSMALQYHPDVCHDPSMKEESTKIFVRLNAAYETLSNPMLREQYDSELGLRNNMMNNNNIVNEEIWRSRWQEQVVELKKRSNRRMEQRGRSWGSTSRMRTQSMKDRN* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3206 179 Gene3D DnaJ domain 38 141 IPR036869 -
Mtr4g3206 179 PRINTS DnaJ domain signature 54 72 IPR001623 -
Mtr4g3206 179 PRINTS DnaJ domain signature 72 87 IPR001623 -
Mtr4g3206 179 PRINTS DnaJ domain signature 92 112 IPR001623 -
Mtr4g3206 179 CDD DnaJ 51 109 IPR001623 -
Mtr4g3206 179 ProSitePatterns Nt-dnaJ domain signature. 97 116 IPR018253 -
Mtr4g3206 179 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 2 177 - -
Mtr4g3206 179 MobiDBLite consensus disorder prediction 151 179 - -
Mtr4g3206 179 Pfam DnaJ domain 51 117 IPR001623 -
Mtr4g3206 179 ProSiteProfiles dnaJ domain profile. 51 120 IPR001623 -
Mtr4g3206 179 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 2 177 - -
Mtr4g3206 179 SUPERFAMILY Chaperone J-domain 33 116 IPR036869 -
Mtr4g3206 179 SMART dnaj_3 50 112 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3206 Mtr-Chr4 45494965 45495728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3206 53 118 C2H2 Transcription Factor Family AT1G74250 39.706 3.47e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3206 - - gmx:100811478 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3206 4 45494965 45495728 Mtr2g0147 2 1525279 1525885 PCT